Evidence map›Paper›PMID 19438285›Full record

ArticleThe journal of physical chemistry. B2009

A spectroscopic investigation of a tridentate Cu-complex mimicking the tyrosine-histidine cross-link of cytochrome C oxidase.

Adam Offenbacher, Kimberly N White, Indranil Sen, Allen G Oliver, Joseph P Konopelski, Bridgette A Barry, Olöf Einarsdóttir

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 12 citations in OpenAlex.

  1. Copper active sites in biology.Chemical reviews · 2014
    Review
  2. CO impedes superfast O2 binding in ba3 cytochrome oxidase from Thermus thermophilus.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Adam OffenbacherDepartment of Chemistry and Biochemistry and the Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, Georgia 30332, USA.
Kimberly N White
Indranil Sen
Allen G Oliver
Joseph P Konopelski
Bridgette A Barry
Olöf Einarsdóttir
University of California, Santa Cruz · USGeorgia Institute of Technology · US

Funding

SPECTROSCOPIC STUDIES OF LIGHT-DRIVEN ELECTRON TRANSFERR01GM043273 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI BARRY, BRIDGETTE ANNE · 1990 to 2010
$3.0M
Mechanism of Dioxygen Reduction by Heme-Copper OxidasesR01GM053788 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI EINARSDOTTIR, OLOF · 1997 to 2010
$2.4M
NIGMS NIH HHS GM 43273NIGMS NIH HHS GM53788NIGMS NIH HHS R01 GM043273NIGMS NIH HHS R01 GM053788
6 · The paper itself

Abstract

Heme-copper oxidases have a crucial role in the energy transduction mechanism, catalyzing the reduction of dioxygen to water. The reduction of dioxygen takes place at the binuclear center, which contains heme a3 and CuB. The X-ray crystal structures have revealed that the C6' of tyrosine 244 (bovine heart numbering) is cross-linked to a nitrogen of histidine 240, a ligand to CuB. The role of the cross-linked tyrosine at the active site still remains unclear. In order to provide insight into the function of the cross-linked tyrosine, we have investigated the spectroscopic and electrochemical properties of chemical analogues of the CuB-His-Tyr site. The analogues, a tridentate histidine-phenol cross-linked ether ligand and the corresponding Cu-containing complex, were previously synthesized in our laboratory (White, K.; et al. Chem. Commun. 2007, 3252-3254). Spectrophotometric titrations of the ligand and the Cu-complex indicate a pKa of the phenolic proton of 8.8 and 7.7, respectively. These results are consistent with the cross-linked tyrosine playing a proton delivery role at the cytochrome c oxidase active site. The presence of the phenoxyl radical was investigated at low temperature using electron paramagnetic resonance (EPR) and Fourier transform infrared (FT-IR) difference spectroscopy. UV photolysis of the ligand, without bound copper, generated a narrow g=2.0047 signal, attributed to the phenoxyl radial. EPR spectra recorded before and after UV photolysis of the Cu-complex showed a g=2 signal characteristic of oxidized copper, suggesting that the copper is not spin-coupled to the phenoxyl radical. An EPR signal from the phenoxyl radical was not observed in the Cu-complex, either due to spin relaxation of the two unpaired electrons or to masking of the narrow phenoxyl radical signal by the strong copper contribution. Stable isotope (13C) labeling of the phenol ring (C1') Cu-complex, combined with photoinduced difference FT-IR spectroscopy, revealed bands at 1485 and 1483 cm(-1) in the 12C-minus-13C-isotope-edited spectra of the ligand and Cu-complex, respectively. These bands are attributed to the radical v7a stretching frequency and are shifted to 1468 and 1472 cm(-1), respectively, with 13C1' labeling. These results show that a radical is generated in both the ligand and the Cu-complex and support the unambiguous assignment of a vibrational band to the phenoxyl radical v7a stretching mode. These data are discussed with respect to a possible role of the cross-linked tyrosine radical in cytochrome c oxidase.

Indexed as

Biomimetic MaterialsCopperCross-Linking ReagentsElectron Transport Complex IVHistidineLigandsOrganometallic CompoundsPhenolsSpectrum AnalysisTitrimetryTyrosineVibrationCopperCross-Linking ReagentsElectron Transport Complex IVHistidineLigandsOrganometallic CompoundsPhenolsphenoxy radicalTyrosine

Identifiers

PMID19438285
PMCPMC2763437
OpenAlexW1996574083

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.