Evidence map›Paper›PMID 19437048›Full record

ArticleJournal of molecular modeling2009

GoLoco motif proteins binding to Galpha(i1): insights from molecular simulations.

Kamil Khafizov

Abstract read
In one paragraph

Article in Journal of molecular modeling, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Kamil KhafizovMax Planck Institute of Biophysics, Frankfurt am Main, Germany. kamil.khafizov@mpibp-frankfurt.mpg.de

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular dynamics simulations, computational alanine scanning and sequence analysis were used to investigate the structural properties of the Galpha(i1)/GoLoco peptide complex. Using these methodologies, binding of the GoLoco motif peptide to the Galpha(i1) subunit was found to restrict the relative movement of the helical and catalytic domains in the Galpha(i1) subunit, which is in agreement with a proposed mechanism of GDP dissociation inhibition by GoLoco motif proteins. In addition, the results provide further insights into the role of the "Switch IV" region located within the helical domain of Galpha, the conformation of which might be important for interactions with various Galpha partners.

Indexed as

Molecular Dynamics SimulationAlanineAmino Acid MotifsCrystallography, X-RayGTP-Binding Protein alpha Subunits, Gi-GoGuanosine DiphosphatePeptidesProtein BindingProtein Structure, SecondarySequence Analysis, ProteinAlanineGTP-Binding Protein alpha Subunits, Gi-GoGuanosine DiphosphatePeptides

Identifiers

PMID19437048
PMCPMC2847169

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.