Evidence map›Paper›PMID 19435936›Full record

ArticleThe Plant cell2009

Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia.

O A Koroleva, G Calder, A F Pendle, S H Kim, D Lewandowska, C G Simpson, I M Jones, J W S Brown, P J Shaw

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 121 citations in OpenAlex.

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  11. Telomerase Interaction Partners-Insight from Plants.International journal of molecular sciences · 2021
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  14. Molecular Characterization and Expression Profile ofPlants (Basel, Switzerland) · 2020
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  18. Article
  19. Review
  20. The Plant cell · 2017
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

O A KorolevaDepartment of Cell Biology, John Ines Centre, Colney, Norwich NR4 7UH, United Kingdom.
G Calder
A F Pendle
S H Kim
D Lewandowska
C G Simpson
I M Jones
J W S Brown
P J Shaw
John Innes Centre · GBMyongji University · KRUniversity of Dundee · GBUniversity of Reading · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/B/13519Biotechnology and Biological Sciences Research Council BBS/E/J/00000128
6 · The paper itself

Abstract

Here, we identify the Arabidopsis thaliana ortholog of the mammalian DEAD box helicase, eIF4A-III, the putative anchor protein of exon junction complex (EJC) on mRNA. Arabidopsis eIF4A-III interacts with an ortholog of the core EJC component, ALY/Ref, and colocalizes with other EJC components, such as Mago, Y14, and RNPS1, suggesting a similar function in EJC assembly to animal eIF4A-III. A green fluorescent protein (GFP)-eIF4A-III fusion protein showed localization to several subnuclear domains: to the nucleoplasm during normal growth and to the nucleolus and splicing speckles in response to hypoxia. Treatment with the respiratory inhibitor sodium azide produced an identical response to the hypoxia stress. Treatment with the proteasome inhibitor MG132 led to accumulation of GFP-eIF4A-III mainly in the nucleolus, suggesting that transition of eIF4A-III between subnuclear domains and/or accumulation in nuclear speckles is controlled by proteolysis-labile factors. As revealed by fluorescence recovery after photobleaching analysis, the nucleoplasmic fraction was highly mobile, while the speckles were the least mobile fractions, and the nucleolar fraction had an intermediate mobility. Sequestration of eIF4A-III into nuclear pools with different mobility is likely to reflect the transcriptional and mRNA processing state of the cell.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsCell HypoxiaCell NucleolusConserved SequenceEnzyme InhibitorsEukaryotic Initiation Factor-4AGreen Fluorescent ProteinsLeupeptinsMolecular Sequence DataProtein TransportRecombinant Fusion ProteinsSequence AlignmentSodium AzideTwo-Hybrid System TechniquesArabidopsis Proteinsbenzyloxycarbonylleucyl-leucyl-leucine aldehydeEnzyme InhibitorsEukaryotic Initiation Factor-4AGreen Fluorescent ProteinsLeupeptinsRecombinant Fusion ProteinsSodium Azide

Identifiers

PMID19435936
PMCPMC2700535
OpenAlexW2118115270

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.