Evidence map›Paper›PMID 19435877›Full record

ArticleNucleic acids research2009

Web services at the European Bioinformatics Institute-2009.

Hamish McWilliam, Franck Valentin, Mickael Goujon, Weizhong Li, Menaka Narayanasamy, Jenny Martin, Teresa Miyar, Rodrigo Lopez

Abstract read
In one paragraph

Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Microorganisms · 2021
    Article
  2. UCSF ChimeraX: Structure visualization for researchers, educators, and developers.Protein science : a publication of the Protein Society · 2021
    Article
  3. IPD-IMGT/HLA Database.Nucleic acids research · 2020
    Article
  4. UCSF ChimeraX: Meeting modern challenges in visualization and analysis.Protein science : a publication of the Protein Society · 2018
    Article
  5. Physiological and Molecular Understanding of Bacterial Polysaccharide Monooxygenases.Microbiology and molecular biology reviews : MMBR · 2017
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. The IMGT/HLA database.Nucleic acids research · 2013
    Article
  13. IPD--the Immuno Polymorphism Database.Nucleic acids research · 2013
    Article
  14. The annotation-enriched non-redundant patent sequence databases.Database : the journal of biological databases and curation · 2013
    Article
  15. Article
  16. Article
  17. Presenting your structures: the CCP4mg molecular-graphics software.Acta crystallographica. Section D, Biological crystallography · 2011
    Article
  18. Article
  19. Review
  20. The IMGT/HLA database.Nucleic acids research · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hamish McWilliamEuropean Bioinformatics Institute, EMBL Outstation, Wellcome Trust Genome Campus, Hinxton, Cambdrige CB10 1SD, UK. hpm@ebi.ac.uk
Franck Valentin
Mickael Goujon
Weizhong Li
Menaka Narayanasamy
Jenny Martin
Teresa Miyar
Rodrigo Lopez

Funding

The UniProt protein sequence and function knowledgebaseU01HG002712 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI APWEILER, ROLF · 2002 to 2009
$44.3M
NHGRI NIH HHS 1 U01 HG02712-01
6 · The paper itself

Abstract

The European Bioinformatics Institute (EMBL-EBI) has been providing access to mainstream databases and tools in bioinformatics since 1997. In addition to the traditional web form based interfaces, APIs exist for core data resources such as EMBL-Bank, Ensembl, UniProt, InterPro, PDB and ArrayExpress. These APIs are based on Web Services (SOAP/REST) interfaces that allow users to systematically access databases and analytical tools. From the user's point of view, these Web Services provide the same functionality as the browser-based forms. However, using the APIs frees the user from web page constraints and are ideal for the analysis of large batches of data, performing text-mining tasks and the casual or systematic evaluation of mathematical models in regulatory networks. Furthermore, these services are widespread and easy to use; require no prior knowledge of the technology and no more than basic experience in programming. In the following we wish to inform of new and updated services as well as briefly describe planned developments to be made available during the course of 2009-2010.

Indexed as

Computational BiologySoftwareAcademies and InstitutesDatabases, GeneticEuropeInternetSequence AlignmentSystems IntegrationUser-Computer Interface

Identifiers

PMID19435877
PMCPMC2703973

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.