Evidence map›Paper›PMID 19433630›Full record

ArticleGenetics2009

Genomewide analysis reveals novel pathways affecting endoplasmic reticulum homeostasis, protein modification and quality control.

Alenka Copic, Mariana Dorrington, Silvere Pagant, Justine Barry, Marcus C S Lee, Indira Singh, John L Hartman, Elizabeth A Miller

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Antibody screening reveals antigenic proteins involved inFrontiers in cellular and infection microbiology · 2023
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  17. Pex35 is a regulator of peroxisome abundance.Journal of cell science · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Alenka CopicDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Mariana Dorrington
Silvere Pagant
Justine Barry
Marcus C S Lee
Indira Singh
John L Hartman
Elizabeth A Miller
Columbia University · USUniversity of Alabama at Birmingham · US

Funding

ER export and the quality control checkpoint during membrane protein biogenesisR01GM078186 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI BULINSKI, JEANNETTE CHLOE, MILLER, ELIZABETH A. · 2006 to 2015
$2.7M
Regulating Folding and Transport of Aberrant Proteins.F31GM078855 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI DORRINGTON, MARIANA · 2006 to 2009
$183k
NIGMS NIH HHS F31 GM078855NIGMS NIH HHS GM-078186NIGMS NIH HHS GM-078855NIGMS NIH HHS R01 GM078186
6 · The paper itself

Abstract

To gain new mechanistic insight into ER homeostasis and the biogenesis of secretory proteins, we screened a genomewide collection of yeast mutants for defective intracellular retention of the ER chaperone, Kar2p. We identified 87 Kar2p-secreting strains, including a number of known components in secretory protein modification and sorting. Further characterization of the 73 nonessential Kar2p retention mutants revealed roles for a number of novel gene products in protein glycosylation, GPI-anchor attachment, ER quality control, and retrieval of escaped ER residents. A subset of these mutants, required for ER retrieval, included the GET complex and two novel proteins that likely function similarly in membrane insertion of tail-anchored proteins. Finally, the variant histone, Htz1p, and its acetylation state seem to play an important role in maintaining ER retrieval pathways, suggesting a surprising link between chromatin remodeling and ER homeostasis.

Indexed as

Genome, FungalAcetylationEndoplasmic ReticulumFungal ProteinsGlycosylationGolgi ApparatusHistonesHomeostasisHSP70 Heat-Shock ProteinsImmunoblottingImmunoprecipitationModels, BiologicalMutationProtein FoldingProtein Processing, Post-TranslationalReceptors, PeptideERD2 protein, S cerevisiaeFungal ProteinsHistonesHSP70 Heat-Shock ProteinsHtz1 protein, S cerevisiaeKAR2 protein, yeastReceptors, PeptideSaccharomyces cerevisiae Proteins

Identifiers

PMID19433630
PMCPMC2710157
OpenAlexW2128684741

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.