Evidence map›Paper›PMID 19433544›Full record

ArticleInfection and immunity2009

Perturbation of the small intestine microbial ecology by streptomycin alters pathology in a Salmonella enterica serovar typhimurium murine model of infection.

Cherilyn D Garner, Dionysios A Antonopoulos, Bettina Wagner, Gerald E Duhamel, Ivan Keresztes, Deborah A Ross, Vincent B Young, Craig Altier

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 131 citations in OpenAlex.

  1. Article
  2. A recombinant lysogenic bacteriophage inhibitsAntimicrobial agents and chemotherapy · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Hyperoxia as a driver of gut dysbiosis.Frontiers in microbiology · 2025
    Review
  7. Article
  8. Article
  9. Conversations in the Gut: The Role of Quorum Sensing in Normobiosis.International journal of molecular sciences · 2023
    Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Cherilyn D GarnerDepartment of Population Medicine and Diagnostic Sciences, Cornell University, Ithaca, NY 14853, USA.
Dionysios A Antonopoulos
Bettina Wagner
Gerald E Duhamel
Ivan Keresztes
Deborah A Ross
Vincent B Young
Craig Altier
Cornell University · USUniversity of Michigan–Ann Arbor · US

Funding

FOOD &WATERBORNE DISEASES INTEGRATED RESEARCH NETWORK, ZOONOES RESEAR-N01AI030054 · NIAID · CORNELL UNIVERSITY · 2003 to 2003
–
NIAID NIH HHS N01 AI030054
6 · The paper itself

Abstract

The small intestine is an important site of infection for many enteric bacterial pathogens, and murine models, including the streptomycin-treated mouse model of infection, are frequently used to study these infections. The environment of the mouse small intestine and the microbiota with which enteric pathogens are likely to interact, however, have not been well described. Therefore, we compared the microbiota and the concentrations of short-chain fatty acids (SCFAs) present in the ileum and cecum of streptomycin-treated mice and untreated controls. We found that the microbiota in the ileum of untreated mice differed greatly from that of the cecum of the same mice, primarily among families of the phylum Firmicutes. Upon treatment with streptomycin, substantial changes in the microbial composition occurred, with a marked loss of population complexity. Characterization of the metabolic products of the microbiota, the SCFAs, showed that formate was present in the ileum but low or not detectable in the cecum while butyrate was present in the cecum but not the ileum. Treatment with streptomycin altered the SCFAs in the cecum, significantly decreasing the concentration of acetate, propionate, and butyrate. In this work, we also characterized the pathology of Salmonella infection in the ileum. Infection of streptomycin-treated mice with Salmonella was characterized by a significant increase in the relative and absolute levels of the pathogen and was associated with more severe ileal inflammation and pathology. Together these results provide a better understanding of the ileal environment in the mouse and the changes that occur upon streptomycin treatment.

Indexed as

BiodiversityAnimalsAnti-Bacterial AgentsBacteriaBacterial TranslocationCecumCluster AnalysisDNA, BacterialDNA, RibosomalFatty Acids, VolatileFemaleHumansIntestine, SmallMiceMolecular Sequence DataPhylogenyAnti-Bacterial AgentsDNA, BacterialDNA, RibosomalFatty Acids, VolatileRNA, Ribosomal, 16SStreptomycin

Identifiers

PMID19433544
PMCPMC2708583
OpenAlexW2101232596

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.