Evidence map›Paper›PMID 19431180›Full record

ArticleAngewandte Chemie (International ed. in English)2009

Fluorescence detection of single-nucleotide polymorphisms with a single, self-complementary, triple-stem DNA probe.

Yi Xiao, Kory J I Plakos, Xinhui Lou, Ryan J White, Jiangrong Qian, Kevin W Plaxco, H Tom Soh

Abstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

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  14. Highly specific SNP detection using 2D graphene electronics and DNA strand displacement.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yi XiaoMaterials Department, University of California, Santa Barbara, Santa Barbara, CA 93106, USA.
Kory J I Plakos
Xinhui Lou
Ryan J White
Jiangrong Qian
Kevin W Plaxco
H Tom Soh

Funding

Rapid Generation of High Affinity Protein Sensor ElementsR21EB008215 · NIBIB · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI SOH, HYONGSOK TOM · 2008 to 2009
$405k
NIBIB NIH HHS R21 EB008215
6 · The paper itself

Abstract

Singled out for its singularity: In a single-step, single-component, fluorescence-based method for the detection of single-nucleotide polymorphisms at room temperature, the sensor is comprised of a single, self-complementary DNA strand that forms a triple-stem structure. The large conformational change that occurs upon binding to perfectly matched (PM) targets results in a significant increase in fluorescence (see picture; F = fluorophore, Q = quencher).

Indexed as

Polymorphism, Single NucleotideBase SequenceDNA ProbesFluorescent DyesSpectrometry, FluorescenceThermodynamicsDNA ProbesFluorescent Dyes

Identifiers

PMID19431180
PMCPMC3053031

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.