Evidence map›Paper›PMID 19429910›Full record

ArticleHuman molecular genetics2009

Pathogenic mechanisms of tooth agenesis linked to paired domain mutations in human PAX9.

Ying Wang, Jay C Groppe, Jingfeng Wu, Takuya Ogawa, Gabriele Mues, Rena N D'Souza, Hitesh Kapadia

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

  1. Pooled it
  2. Epigenetic, Genetic, and Functional Germline Alterations ofCurrent issues in molecular biology · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Tooth agenesis patterns and variants inThe Japanese dental science review · 2023
    Review
  7. Review
  8. Article
  9. International journal of molecular sciences · 2023
    Article
  10. Four NovelInternational journal of molecular sciences · 2022
    Article
  11. Article
  12. The role of external aetiological factors in dental anomalies in non-syndromic cleft lip and palate patients.European archives of paediatric dentistry : official journal of the European Academy of Paediatric Dentistry · 2019
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Msx1 mutations: how do they cause tooth agenesis?Journal of dental research · 2011
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Ying WangDepartment of Biomedical Sciences, Texas A&M University Health Science Center, Baylor College of Dentistry, Dallas, TX 75246, USA.
Jay C Groppe
Jingfeng Wu
Takuya Ogawa
Gabriele Mues
Rena N D'Souza
Hitesh Kapadia
Texas A&M University · USNew York University · USTokyo Medical and Dental University · JP

Funding

BCD Research Infrastructure Enhancement ProgramU24DE016472 · NIDCR · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI CARLSON, DAVID S. · 2004 to 2005
$2.8M
Molecular Studies on Transactivation Potential of PAX9R03DE016346 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI KAPADIA, HITESH · 2005 to 2006
$146k
NIDCR NIH HHS DE16346NIDCR NIH HHS DE16472NIDCR NIH HHS R03 DE016346NIDCR NIH HHS U24 DE016472
6 · The paper itself

Abstract

Mutations in the paired-domain transcription factor PAX9 are associated with non-syndromic tooth agenesis that preferentially affects posterior dentition. Of the 18 mutations identified to date, eight are phenotypically well-characterized missense mutations within the DNA-binding paired domain. We determined the structural and functional consequences of these paired domain missense mutations and correlated our findings with the associated dental phenotype variations. In vitro testing included subcellular localization, protein-protein interactions between MSX1 and mutant PAX9 proteins, binding of PAX9 mutants to a DNA consensus site and transcriptional activation from the Pax9 effector promoters Bmp4 and Msx1 with and without MSX1 as co-activator. All mutant PAX9 proteins were localized in the nucleus of transfected cells and physically interacted with MSX1 protein. Three of the mutants retained the ability to bind the consensus paired domain recognition sequence; the others were unable or only partly able to interact with this DNA fragment and also showed a similarly impaired capability for activation of transcription from the Msx1 and Bmp4 promoters. For seven of the eight mutants, the degree of loss of DNA-binding and promoter activation correlated quite well with the severity of the tooth agenesis pattern seen in vivo. One of the mutants however showed neither reduction in DNA-binding nor decrease in transactivation; instead, a loss of responsiveness to synergism with MSX1 in target promoter activation and a dominant negative effect when expressed together with wild-type PAX9 could be observed. Our structure-based studies, which modeled DNA binding and subdomain stability, were able to predict functional consequences quite reliably.

Indexed as

MutationAmino Acid SequenceAnimalsBinding SitesBone Morphogenetic Protein 4Chlorocebus aethiopsCOS CellsHumansMiceMolecular Sequence DataMSX1 Transcription FactorPAX9 Transcription FactorPromoter Regions, GeneticProtein BindingProtein Structure, TertiarySequence AlignmentBone Morphogenetic Protein 4MSX1 protein, humanMSX1 Transcription FactorPAX9 Transcription Factor

Identifiers

PMID19429910
PMCPMC2706687
OpenAlexW1964910702

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.