ArticleJournal of experimental botany2009
Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings.
Article in Journal of experimental botany, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 58 citations in OpenAlex.
- Membrane-associated DELLA degradation modulates growth under carbon/nitrogen imbalance.The Plant cell · 2026Article
- Quantitative proteomics reveals extensive lysine ubiquitination and transcription factor stability states in Arabidopsis.The Plant cell · 2024Article
- Localization of the MTP4 transporter to trans-Golgi network in pollen tubes of Arabidopsis thaliana.Journal of plant research · 2024Article
- Protein-protein interactions in plant antioxidant defense.Frontiers in plant science · 2022Review
- Protein Profiling of Arabidopsis Roots Treated With Humic Substances: Insights Into the Metabolic and Interactome Networks.Frontiers in plant science · 2018Article
- Comprehensive profiling of lysine ubiquitome reveals diverse functions of lysine ubiquitination in common wheat.Scientific reports · 2017Article
- Unraveling K63 Polyubiquitination Networks by Sensor-Based Proteomics.Plant physiology · 2016Article
- Proteomics and transcriptomics analyses of Arabidopsis floral buds uncover important functions of ARABIDOPSIS SKP1-LIKE1.BMC plant biology · 2016Article
- It's Time for Some "Site"-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana.The Plant cell · 2016Review
- Helping hands for budding prospects: ENTH/ANTH/VHS accessory proteins in endocytosis, vacuolar transport, and secretion.The Plant cell · 2014Review
- Protein abundance changes and ubiquitylation targets identified after inhibition of the proteasome with syringolin A.Molecular & cellular proteomics : MCP · 2014Article
- The carbon/nitrogen regulator ARABIDOPSIS TOXICOS EN LEVADURA31 controls papilla formation in response to powdery mildew fungi penetration by interacting with SYNTAXIN OF PLANTS121 in Arabidopsis.Plant physiology · 2014Article
- Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis.The Plant cell · 2013Article
- Wheat F-box protein recruits proteins and regulates their abundance during wheat spike development.Molecular biology reports · 2012Article
- A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins.PloS one · 2012Article
- Leveraging proteomics to understand plant-microbe interactions.Frontiers in plant science · 2012Article
- Tissue-specific expression and post-translational modifications of plant- and bacterial-type phosphoenolpyruvate carboxylase isozymes of the castor oil plant, Ricinus communis L.Journal of experimental botany · 2011Article
- Characterization of bacterial-type phosphoenolpyruvate carboxylase expressed in male gametophyte of higher plants.BMC plant biology · 2010Article
- The deubiquitinating enzyme AMSH3 is required for intracellular trafficking and vacuole biogenesis in Arabidopsis thaliana.The Plant cell · 2010Article
- Genomics and bioinformatics resources for crop improvement.Plant & cell physiology · 2010Review
Corrections and comments
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Authors and funding
9 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The majority of proteins in eukaryotic cells are modified according to highly regulated mechanisms to fulfill specific functions and to achieve localization, stability, and transport. Protein ubiquitination is one of the major post-translational modifications occurring in eukaryotic cells. To obtain the proteomic dataset related to the ubiquitin (Ub)-dependent regulatory system in Arabidopsis, affinity purification with an anti-Ub antibody under native condition was performed. Using MS/MS analysis, 196 distinct proteins represented by 251 distinct genes were identified. The identified proteins were involved in metabolism (23.0%), stress response (21.4%), translation (16.8%), transport (6.7%), cell morphology (3.6%), and signal transduction (1.5%), in addition to proteolysis (16.8%) to which proteasome subunits (14.3%) is included. On the basis of potential ubiquitination-targeting signal motifs, in-gel mobilities, and previous reports, 78 of the identified proteins were classified as ubiquitinated proteins and the rest were speculated to be associated proteins of ubiquitinated proteins. The degradation of three proteins predicted to be ubiquitinated proteins was inhibited by a proteasome inhibitor, suggesting that the proteins were regulated by Ub/proteasome-dependent proteolysis.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.