Evidence map›Paper›PMID 19429622›Full record

ArticleJournal of bacteriology2009

Involvement of the leucine response transcription factor LeuO in regulation of the genes for sulfa drug efflux.

Tomohiro Shimada, Kaneyoshi Yamamoto, Akira Ishihama

Abstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Review
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  8. Review
  9. Article
  10. Frontiers in cellular and infection microbiology · 2019
    Review
  11. Discovery ofInternational journal of molecular sciences · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Correlation of Antagonistic Regulation ofFrontiers in cellular and infection microbiology · 2016
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Tomohiro ShimadaDepartment of Frontier Bioscience, Hosei University, Tokyo, Japan.
Kaneyoshi Yamamoto
Akira Ishihama

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

LeuO, a LysR family transcription factor, exists in a wide variety of bacteria of the family Enterobacteriaceae and is involved in the regulation of as yet unidentified genes affecting the stress response and pathogenesis expression. Using genomic screening by systematic evolution of ligands by exponential enrichment (SELEX) in vitro, a total of 106 DNA sequences were isolated from 12 different regions of the Escherichia coli genome. All of the SELEX fragments formed complexes in vitro with purified LeuO. After Northern blot analysis of the putative target genes located downstream of the respective LeuO-binding sequence, a total of nine genes were found to be activated by LeuO, while three genes were repressed by LeuO. The LeuO target gene collection included several multidrug resistance genes. A phenotype microarray assay was conducted to identify the gene(s) responsible for drug resistance and the drug species that are under the control of the LeuO target gene(s). The results described herein indicate that the yjcRQP operon, one of the LeuO targets, is involved in sensitivity control against sulfa drugs. We propose to rename the yjcRQP genes the sdsRQP genes (sulfa drug sensitivity determinant).

Indexed as

Drug Resistance, BacterialGene Expression Regulation, BacterialAnti-Infective AgentsBiological TransportEscherichia coliEscherichia coli ProteinsGene Expression ProfilingMembrane Transport ProteinsSELEX Aptamer TechniqueSulfanilamidesTranscription FactorsAnti-Infective AgentsEscherichia coli ProteinsLeuO protein, E coliMembrane Transport ProteinsSulfanilamidesTranscription Factors

Identifiers

PMID19429622
PMCPMC2704711

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.