Evidence map›Paper›PMID 19429614›Full record

ArticleJournal of bacteriology2009

Identification of ORF636 in phage phiSLT carrying Panton-Valentine leukocidin genes, acting as an adhesion protein for a poly(glycerophosphate) chain of lipoteichoic acid on the cell surface of Staphylococcus aureus.

Jun Kaneko, Sachiko Narita-Yamada, Yukari Wakabayashi, Yoshiyuki Kamio

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Temperate Phages ofMicrobiology spectrum · 2019
    Review
  8. Review
  9. Determinants of Phage Host Range inApplied and environmental microbiology · 2019
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jun KanekoDepartment of Microbial Biotechnology, Graduate School of Agricultural Science, Tohoku University, Aoba-ku, Sendai, Japan. jkaneko@biochem.tohoku.ac.jp
Sachiko Narita-Yamada
Yukari Wakabayashi
Yoshiyuki Kamio
Tohoku University · JPShokei Gakuin University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The temperate phage phiSLT of Staphylococcus aureus carries genes for Panton-Valentine leukocidin. Here, we identify ORF636, a constituent of the phage tail tip structure, as a recognition/adhesion protein for a poly(glycerophosphate) chain of lipoteichoic acid on the cell surface of S. aureus. ORF636 bound specifically to S. aureus; it did not bind to any other staphylococcal species or to several gram-positive bacteria.

Indexed as

Virus AttachmentAmino Acid SequenceBacterial ToxinsExotoxinsGlycerophosphatesLeukocidinsMolecular Sequence DataOpen Reading FramesProtein BindingSequence AlignmentStaphylococcus aureusStaphylococcus PhagesSurface Plasmon ResonanceViral Plaque AssayViral Tail ProteinsBacterial ToxinsExotoxinsGlycerophosphatesLeukocidinsPanton-Valentine leukocidinViral Tail Proteins

Identifiers

PMID19429614
PMCPMC2704714
OpenAlexW2144620064

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.