Evidence map›Paper›PMID 19428677›Full record

ArticleMolecular and biochemical parasitology2009

Efficient genotyping of Schistosoma mansoni miracidia following whole genome amplification.

Claudia L L Valentim, Philip T LoVerde, Timothy J C Anderson, Charles D Criscione

Abstract read
In one paragraph

Article in Molecular and biochemical parasitology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Review
  3. Identification of genetic variations inThe Journal of international medical research · 2019
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Characterisation of a novel panel of polymorphic microsatellite loci for the liver fluke, Fasciola hepatica, using a next generation sequencing approach.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2015
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Applying evolutionary genetics to schistosome epidemiology.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2010
    Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Claudia L L ValentimDepartment of Genetics, Southwest Foundation for Biomedical Research, San Antonio, TX 78245, USA.
Philip T LoVerde
Timothy J C Anderson
Charles D Criscione
The University of Texas Health Science Center at San Antonio · USTexas A&M University · USTexas Biomedical Research Institute · US

Funding

Training to Enhance Schistosomiasis Research in BrazilD43TW006580 · FIC · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI LOVERDE, PHILIP T · 2003 to 2007
$726k
A Linkage Map for Schistosoma mansoniR21AI072704 · NIAID · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI ANDERSON, TIM J · 2007 to 2008
$466k
MOLECULAR AND BIOCHEMICAL GENETICS LABORATORY RENOVATIONC06RR013556 · NCRR · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI SHADE, ROBERT E · 1998 to 1998
–
TICK SYSTEMATICS ON A GLOBAL BASISR01AI030026 · NIAID · GEORGIA SOUTHERN UNIVERSITY · PI KEIRANS, JAMES E · 1990 to 1994
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FIC NIH HHS D43 TW006580NCRR NIH HHS C06 RR013556NIAID NIH HHS AI30026NIAID NIH HHS N01 AI030026NIAID NIH HHS R21 AI072704Wellcome Trust
6 · The paper itself

Abstract

Small parasites and larval stages pose a problem for molecular analyses because limited amounts of DNA template are available. Isothermal methods for faithfully copying DNA have the potential to revolutionize studies of such organisms. We evaluated the fidelity of multiple displacement amplification (MDA) for amplifying DNA extracted from a single miracidium of Schistosoma mansoni. To do this we genotyped DNA extracted from 28 F1 miracidia following MDA using 56 microsatellite markers. Because these miracidia were obtained from a cross between a male and female worm of known genotypes, we were able to predict the alleles present in the progeny and quantify the genotyping error rate. We found just 8/1568 genotypes deviated from Mendelian expectations. Furthermore, because 1 of these resulted from a genuine mutation, the error rate due to MDA is 7/1568 (0.45%). We conclude that many hundreds of microsatellites or other genetic markers can be accurately genotyped from a single miracidium using this method, greatly expanding the scope of population genetic, epidemiological and evolutionary studies on this parasite.

Indexed as

AnimalsFemaleGenetic TechniquesGenome, HelminthGenotypeLife Cycle StagesMaleMicrosatellite RepeatsReproducibility of ResultsSchistosoma mansoni

Identifiers

PMID19428677
PMCPMC2771185
OpenAlexW2024456232

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.