Evidence map›Paper›PMID 19426871›Full record

ArticleMethods in enzymology2009

Functional characterization of phosphorylation sites in dynamin-related protein 1.

J Thomas Cribbs, Stefan Strack

Open access · greenAbstract read
In one paragraph

Article in Methods in enzymology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
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  5. Review
  6. Mitochondrial heterogeneity in diseases.Signal transduction and targeted therapy · 2023
    Review
  7. Article
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  16. High-Throughput Image Analysis of Lipid-Droplet-Bound Mitochondria.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  17. Article
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

J Thomas CribbsDepartment of Pharmacology, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Stefan Strack
University of Iowa · US

Funding

Kinase/Phosphatase-mediated Mitochondrial Restructuring in NeuroprotectionR01NS056244 · NINDS · UNIVERSITY OF IOWA · PI STRACK, STEFAN · 2007 to 2016
$2.9M
Regulation of Mitochondrial Fission/Fusion by PP2A and PKA in NeuronsR01NS057714 · NINDS · UNIVERSITY OF IOWA · PI STRACK, STEFAN · 2007 to 2009
$594k
Kinase/phosphatase-mediated Mitochondrial Restructuring in NeuroprotectionR56NS056244 · NINDS · UNIVERSITY OF IOWA · PI STRACK, STEFAN · 2012 to 2012
$378k
NINDS NIH HHS R01 NS056244NINDS NIH HHS R01 NS057714NINDS NIH HHS R56 NS056244
6 · The paper itself

Abstract

Dynamin-related protein 1 is member of the dynamin-family of large GTPases. Similar to the endocytosis motor dynamin, Drp1 uses GTP hydrolysis to power constriction of the outer mitochondrial membrane and ultimately mitochondrial division. Dynamin phosphorylation in its unique C-terminal proline-rich domain interferes with binding of accessory proteins that induce membrane curvature and inhibits clathrin-mediated endocytosis. Evidence within the last few years indicates that Drp1 is also regulated by the phosphorylation/dephosphorylation cycle. Drp1 regulation is complex, in that both inhibitory and activating phosphorylations have been described that lead to, respectively, mitochondrial elongation and shortening. In this chapter, we describe methods for the identification and functional characterization of Drp1 phosphorylation sites. Among these methods is replacement of the endogenous protein by phosphorylation-site mutant Drp1 via combined shRNA and RNAi-resistant cDNA expression from the same plasmid. We also discuss primary astrocyte cultures as a model for regulation of cell death and mitochondrial morphology by Drp1 and present ImageJ macro source code for unbiased quantification of mitochondrial shape changes.

Indexed as

Amino Acid SequenceAnimalsCell DeathCell LineCells, CulturedDynaminsGTP PhosphohydrolasesHumansImmunoprecipitationMicrotubule-Associated ProteinsMitochondriaMitochondrial ProteinsMolecular Sequence DataMutagenesis, Site-DirectedPhosphorus RadioisotopesPhosphorylationDNM1L protein, humanDynaminsGTP PhosphohydrolasesMicrotubule-Associated ProteinsMitochondrial ProteinsPhosphorus RadioisotopesRecombinant ProteinsRNA, Untranslated

Identifiers

PMID19426871
PMCPMC4271647
OpenAlexW2191874443

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.