Evidence map›Paper›PMID 19426526›Full record

ArticleBMC neuroscience2009

The genetic control of neocortex volume and covariation with neocortical gene expression in mice.

Shiv M Gaglani, Lu Lu, Robert W Williams, Glenn D Rosen

Abstract read
In one paragraph

Article in BMC neuroscience, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Frontiers in genetics · 2020
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Genetics of gene expression in CNS.International review of neurobiology · 2014
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Candidate genes in ocular dominance plasticity.Frontiers in neuroscience · 2012
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Shiv M GaglaniDepartment of Neurology, Division of Behavioral Neurology, Beth Israel Deaconess Medical Center, Boston, MA 02215, USA. sgaglani@fas.harvard.edu
Lu Lu
Robert W Williams
Glenn D Rosen

Funding

MOUSE BIRNU24RR021760 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TOGA, ARTHUR W · 2005 to 2009
$11.6M
Modeling heterogeneity for safe cancer prevention and detectionU01CA105417 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI THREADGILL, DAVID W. · 2004 to 2013
$6.7M
Informatics Center for Mouse NeurogeneticsP20DA021131 · NIDA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI WILLIAMS, ROBERT W. · 2005 to 2009
$5.0M
Systems Genetics of Alcohol Response and Stress Effects in CNSU01AA013499 · NIAAA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI WILLIAMS, ROBERT W. · 2002 to 2016
$4.8M
Genetic Analysis of Ethanol-Mediated Stress ReductionU01AA014425 · NIAAA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI LU, LU · 2004 to 2008
$2.1M
QTL mapping of cell number in the mouse CNSR01NS052397 · NINDS · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ROSEN, GLENN D · 2007 to 2011
$1.8M
NCI NIH HHS U01 CA105417NCI NIH HHS U01CA105417NCRR NIH HHS U24 RR021760NCRR NIH HHS U24RR021760NIAAA NIH HHS U01 AA013499NIAAA NIH HHS U01 AA014425NIAAA NIH HHS U01AA014425NIAAA NIH HHS U01AA13499NIDA NIH HHS DA021131NIDA NIH HHS P20 DA021131NINDS NIH HHS NS052397NINDS NIH HHS R01 NS052397
6 · The paper itself

Abstract

backgroundThe size of the cerebral cortex varies widely within human populations, and a large portion of this variance is modulated by genetic factors. The discovery and characterization of these genes and their variants can contribute to an understanding of individual differences in brain development, behavior, and disease susceptibility. Here we use unbiased stereological techniques to map quantitative trait loci (QTLs) that modulate the volume of neocortex.

resultsWe estimated volumes bilaterally in an expanded set of BXD recombinant inbred strains (n = 56 strains and 223 animals) taken from the Mouse Brain Library http://www.mbl.org. We generated matched microarray data for the cerebral cortex in the same large panel of strains and in parental neonates to efficiently nominate and evaluate candidate genes. Volume of the neocortex varies widely, and is a heritable trait. Genome-wide mapping of this trait revealed two QTLs--one on chromosome (Chr) 6 at 88 +/- 5 Mb and another at Chr 11 (41 +/- 8 Mb). We generated both neonatal and adult neocortical gene expression databases using microarray technology. Using these databases in combination with other bioinformatic tools we have identified positional candidates on these QTL intervals.

conclusionThis study is the first to use the expanded set of BXD strains to map neocortical volume, and we found that normal variation of this trait is, at least in part, genetically modulated. These results provide a baseline from which to assess the genetic contribution to regional variation in neocortical volume, as well as other neuroanatomic phenotypes that may contribute to variation in regional volume, such as proliferation, death, and number and packing density of neurons.

Indexed as

Chromosome MappingGene Expression ProfilingAnimalsFunctional LateralityGenetic VariationMiceMice, Inbred C57BLMice, Inbred DBAMice, Inbred StrainsNeocortexOrgan SizeQuantitative Trait LociRecombinant ProteinsRecombination, GeneticSpecies SpecificityRecombinant Proteins

Identifiers

PMID19426526
PMCPMC2685397

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.