Evidence map›Paper›PMID 19422698›Full record

ArticleBMC microbiology2009

piggyBac is an effective tool for functional analysis of the Plasmodium falciparum genome.

Bharath Balu, Chitra Chauhan, Steven P Maher, Douglas A Shoue, Jessica C Kissinger, Malcolm J Fraser, John H Adams

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 79 citations in OpenAlex.

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  16. Targeting Gametocytes of the Malaria ParasitePathogens (Basel, Switzerland) · 2021
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  18. AttenuatedFrontiers in immunology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Bharath BaluDepartment of Global Health, University of South Florida, Tampa, Florida 33612, USA. bbalu@health.usf.edu
Chitra Chauhan
Steven P Maher
Douglas A Shoue
Jessica C Kissinger
Malcolm J Fraser
John H Adams
University of South Florida · USUniversity of Notre Dame · USUniversity of Georgia · US

Funding

MOLECULAR ANALYSIS OF APICAL ORGANELLES OF PLASMODIUMR01AI033656 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI ADAMS, JOHN H · 2000 to 2009
$2.9M
NIAID NIH HHS R01 AI033656
6 · The paper itself

Abstract

backgroundMuch of the Plasmodium falciparum genome encodes hypothetical proteins with limited homology to other organisms. A lack of robust tools for genetic manipulation of the parasite limits functional analysis of these hypothetical proteins and other aspects of the Plasmodium genome. Transposon mutagenesis has been used widely to identify gene functions in many organisms and would be extremely valuable for functional analysis of the Plasmodium genome.

resultsIn this study, we investigated the lepidopteran transposon, piggyBac, as a molecular genetic tool for functional characterization of the Plasmodium falciparum genome. Through multiple transfections, we generated 177 unique P. falciparum mutant clones with mostly single piggyBac insertions in their genomes. Analysis of piggyBac insertion sites revealed random insertions into the P. falciparum genome, in regards to gene expression in parasite life cycle stages and functional categories. We further explored the possibility of forward genetic studies in P. falciparum with a phenotypic screen for attenuated growth, which identified several parasite genes and pathways critical for intra-erythrocytic development.

conclusionOur results clearly demonstrate that piggyBac is a novel, indispensable tool for forward functional genomics in P. falciparum that will help better understand parasite biology and accelerate drug and vaccine development.

Indexed as

DNA Transposable ElementsGenome, ProtozoanAnimalsGenomicsMutagenesis, InsertionalPlasmidsPlasmodium falciparumTransfectionDNA Transposable Elements

Identifiers

PMID19422698
PMCPMC2686711
OpenAlexW2038634768

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.