Evidence map›Paper›PMID 19422606›Full record

ArticlePigment cell & melanoma research2009

Frequent mutations in the MITF pathway in melanoma.

Julia C Cronin, John Wunderlich, Stacie K Loftus, Todd D Prickett, Xiaomu Wei, Katie Ridd, Swapna Vemula, Allison S Burrell, Neena S Agrawal, Jimmy C Lin and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Pigment cell & melanoma research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 145 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Clinical Significance of SOX10 Expression in Human Pathology.Current issues in molecular biology · 2023
    Review
  8. Review
  9. Article
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  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
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  18. Review
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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 1 country.

Julia C CroninNational Human Genome Research Institute, Bethesda, MD, USA.
John Wunderlich
Stacie K Loftus
Todd D Prickett
Xiaomu Wei
Katie Ridd
Swapna Vemula
Allison S Burrell
Neena S Agrawal
Jimmy C Lin
Carolyn E Banister
Phillip Buckhaults
Steven A Rosenberg
Boris C Bastian
William J Pavan
Yardena Samuels
National Human Genome Research Institute · USNational Institutes of Health · USNational Cancer Institute · USUCSF Helen Diller Family Comprehensive Cancer Center · USUniversity of South Carolina · USSidney Kimmel Cancer Center · USUniversity of California, San Francisco · US

Funding

Adoptive Cell Transfer Immunotherapy of CancerZIABC010984 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ROSENBERG, STEVEN · 2009 to 2025
$56.8M
Surgery Branch Cell Prep CoreZICBC010905 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI HALAS, HYUNMI · 2009 to 2025
$23.9M
ANALYSIS OF DOMINANT MEGACOLON--ANOTHER MODEL FORHIRSCHSPRUNG DISEASEZIAHG000070 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI PAVAN, WILLIAM J · 2009 to 2023
$13.4M
Mutational and Functional Analysis of Sporadic Malignant MelanomaZIAHG200337 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI SAMUELS, YARDENA · 2009 to 2013
$5.0M
Mutational analysis of signal transducing gene families in malignant melanomaZ01HG200337 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI SAMUELS, YARDENA · 2007 to 2008
$3.5M
Intramural NIH HHS Z01 HG200337Intramural NIH HHS Z99 HG999999
6 · The paper itself

Abstract

Microphthalmia-associated transcription factor (MITF) is involved in melanocyte cell development, pigmentation and neoplasia. To determine whether MITF is somatically mutated in melanoma, we compared the sequence of MITF from primary and metastatic lesions to patient-matched normal DNA. In the 50 metastatic melanoma tumor lines analysed, we discovered four samples that had genomic amplifications of MITF and four that had MITF mutations in the regions encoding the transactivation, DNA binding or basic, helix-loop-helix domains. Sequence analysis for SOX10, a transcription factor, which both acts upstream of MITF and synergizes with MITF, identified an additional three samples with frameshift or nonsense mutations. Microphthalmia-associated transcription factor and SOX10 were found to be mutated in a mutually exclusive fashion, possibly suggesting disruption in a common genetic pathway. Taken together we found that over 20% of the metastatic melanoma cases had alterations in the MITF pathway. We show that the MITF pathway is also altered in primary melanomas: 2/26 demonstrated mutations in MITF and 6/55 demonstrated mutations in SOX10. Our findings suggest that altered MITF function during melanomagenesis can be achieved by MITF amplification, MITF single base substitutions or by mutation of its regulator SOX10.

Indexed as

MutationCell Line, TumorCodon, NonsenseFrameshift MutationGenes, rasHumansMelanomaMicrophthalmia-Associated Transcription FactorNeoplasm MetastasisProto-Oncogene Proteins B-rafSkin NeoplasmsSOXE Transcription FactorsBRAF protein, humanCodon, NonsenseMicrophthalmia-Associated Transcription FactorProto-Oncogene Proteins B-rafSOX10 protein, humanSOXE Transcription Factors

Identifiers

PMID19422606
PMCPMC2728363
OpenAlexW2067937212

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.