Evidence map›Paper›PMID 19421422›Full record

ArticleExperimental diabetes research2009

Sequence variation and expression of the Gimap gene family in the BB rat.

Elizabeth A Rutledge, Jessica M Fuller, Brian Van Yserloo, Daniel H Moralejo, Ruth A Ettinger, Prashant Gaur, Jana L Hoehna, Morgan R Peterson, Richard Jensen, Anne E Kwitek and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Experimental diabetes research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Animal models of diabetic retinopathy.Annals of translational medicine · 2021
    Review
  5. Article
  6. Article
  7. Animal Models of Diabetic Retinopathy.Current diabetes reports · 2017
    Review
  8. Article
  9. Article
  10. Article
  11. GIMAP Proteins in T-Lymphocytes.Journal of signal transduction · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Elizabeth A RutledgeDiabetes and Endocrinology Research Center, University of Washington, Seattle, WA 98109, USA.
Jessica M Fuller
Brian Van Yserloo
Daniel H Moralejo
Ruth A Ettinger
Prashant Gaur
Jana L Hoehna
Morgan R Peterson
Richard Jensen
Anne E Kwitek
Ake Lernmark
University of Washington · USLund University · SESalish Kootenai College · USUniversity of Iowa · US

Funding

Vector and Transgenic Mouse CoreP30DK017047 · NIDDK · UNIVERSITY OF WASHINGTON · PI Sakeneh Zraika · 1986 to 2026
$41.4M
GENETIC CONTROL OF BB RAT AUTOIMMUNITY.P01AI042380 · NIAID · UNIVERSITY OF WASHINGTON · PI LERNMARK, AKE · 1997 to 2009
$8.2M
NIAID NIH HHS AI42380NIAID NIH HHS P01 AI042380NIDDK NIH HHS DK17047NIDDK NIH HHS P30 DK017047
6 · The paper itself

Abstract

Positional cloning of lymphopenia (lyp) in the BB rat revealed a frameshift mutation in Gimap5, a member of at least seven related GTPase Immune Associated Protein genes located on rat chromosome 4q24. Our aim was to clone and sequence the cDNA of the BB diabetes prone (DP) and diabetes resistant (DR) alleles of all seven Gimap genes in the congenic DR.lyp rat line with 2 Mb of BB DP DNA introgressed onto the DR genetic background. All (100%) DR.(lyp/lyp) rats are lymphopenic and develop type 1 diabetes (T1D) by 84 days of age while DR.(+/+) rats remain T1D and lyp resistant. Among the seven Gimap genes, the Gimap5 frameshift mutation, a mutant allele that produces no protein, had the greatest impact on lymphopenia in the DR.(lyp/lyp) rat. Gimap4 and Gimap1 each had one amino acid substitution of unlikely significance for lymphopenia. Quantitative RT-PCR analysis showed a reduction in expression of all seven Gimap genes in DR.(lyp/lyp) spleen and mesenteric lymph nodes when compared to DR.(+/+). Only four; Gimap1, Gimap4, Gimap5, and Gimap9 were reduced in thymus. Our data substantiates the Gimap5 frameshift mutation as the primary defect with only limited contributions to lymphopenia from the remaining Gimap genes.

Indexed as

Multigene FamilyAmino Acid SequenceAnimalsAnimals, CongenicBase SequenceChromosome MappingCloning, MolecularDiabetes Mellitus, Type 1Disease Models, AnimalDNA, ComplementaryDNA PrimersFemaleFrameshift MutationGene ExpressionGenetic VariationGTP-Binding ProteinsDNA, ComplementaryDNA PrimersGimap5 protein, ratGTP-Binding ProteinsRNA, Messenger

Identifiers

PMID19421422
PMCPMC2676327
OpenAlexW2132528355

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.