Evidence map›Paper›PMID 19421331›Full record

ArticlePloS one2009

Analysis of SEC9 suppression reveals a relationship of SNARE function to cell physiology.

Daniel C Williams, Peter J Novick

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. NLR surveillance of essential SEC-9 SNARE proteins induces programmed cell death upon allorecognition in filamentous fungi.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Daniel C WilliamsDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT, USA.
Peter J Novick
Yale University · US

Funding

GENETICS OF SECRETION IN YEASTR01GM035370 · NIGMS · YALE UNIVERSITY · PI PETER Jay NOVICK · 1985 to 2026
$7.0M
Coordination of membrane traffic through rab GEF and GAP cascadesR01GM082861 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NOVICK, PETER JAY · 2008 to 2020
$4.4M
Genetics of Secretion in YeastR37GM035370 · NIGMS · YALE UNIVERSITY · PI NOVICK, PETER JAY · 2001 to 2010
$3.9M
NIGMS NIH HHS GM082861NIGMS NIH HHS GM35370NIGMS NIH HHS R01 GM035370NIGMS NIH HHS R01 GM082861NIGMS NIH HHS R37 GM035370
6 · The paper itself

Abstract

backgroundGrowth and division of Saccharomyces cerevisiae is dependent on the action of SNARE proteins that are required for membrane fusion. SNAREs are regulated, through a poorly understood mechanism, to ensure membrane fusion at the correct time and place within a cell. Although fusion of secretory vesicles with the plasma membrane is important for yeast cell growth, the relationship between exocytic SNAREs and cell physiology has not been established. METHODOLOGY/PRINCIPAL

findingsUsing genetic analysis, we identified several influences on the function of exocytic SNAREs. Genetic disruption of the V-ATPase, but not vacuolar proteolysis, can suppress two different temperature-sensitive mutations in SEC9. Suppression is unlikely due to increased SNARE complex formation because increasing SNARE complex formation, through overexpression of SRO7, does not result in suppression. We also observed suppression of sec9 mutations by growth on alkaline media or on a non-fermentable carbon source, conditions associated with a reduced growth rate of wild-type cells and decreased SNARE complex formation. CONCLUSIONS/SIGNIFICANCE: Three main conclusions arise from our results. First, there is a genetic interaction between SEC9 and the V-ATPase, although it is unlikely that this interaction has functional significance with respect to membrane fusion or SNAREs. Second, Sro7p acts to promote SNARE complex formation. Finally, Sec9p function and SNARE complex formation are tightly coupled to the physiological state of the cell.

Indexed as

Adaptor Proteins, Signal TransducingCarrier ProteinsMutationQa-SNARE ProteinsQc-SNARE ProteinsR-SNARE ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSNARE ProteinsTemperatureVacuolar Proton-Translocating ATPasesVacuolesAdaptor Proteins, Signal TransducingCarrier ProteinsQa-SNARE ProteinsQc-SNARE ProteinsR-SNARE ProteinsSaccharomyces cerevisiae ProteinsSEC9 protein, S cerevisiaeSNARE ProteinsSNC1 protein, S cerevisiaeSNC2 protein, S cerevisiaeSRO7 protein, S cerevisiaeSSO1 protein, S cerevisiaeSSO2 protein, S cerevisiaeVacuolar Proton-Translocating ATPasesV-ATPase a subunit, S cerevisiae

Identifiers

PMID19421331
PMCPMC2674220
OpenAlexW2039644903

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.