ArticleNucleic acids research2009
Protinfo PPC: a web server for atomic level prediction of protein complexes.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
13 citing papers in PubMed, 20 citations in OpenAlex.
- Review
- Role and mechanism of action of leucine-rich repeat kinase 1 in bone.Bone research · 2017Review
- Leucine-rich repeat kinase-1 regulates osteoclast function by modulating RAC1/Cdc42 Small GTPase phosphorylation and activation.American journal of physiology. Endocrinology and metabolism · 2016Article
- Exploring Polypharmacology in Drug Discovery and Repurposing Using the CANDO Platform.Current pharmaceutical design · 2016Review
- Refining the Structural Model of a Heterohexameric Protein Complex: Surface Induced Dissociation and Ion Mobility Provide Key Connectivity and Topology Information.ACS central science · 2015Article
- High intralocus variability and interlocus recombination promote immunological diversity in a minimal major histocompatibility system.BMC evolutionary biology · 2014Article
- Immunization with a functional protein complex required for erythrocyte invasion protects against lethal malaria.Proceedings of the National Academy of Sciences of the United States of America · 2014Article
- Structural bioinformatics of the interactome.Annual review of biophysics · 2014Review
- BioAssemblyModeler (BAM): user-friendly homology modeling of protein homo- and heterooligomers.PloS one · 2014Article
- Evolution of ancient functions in the vertebrate insulin-like growth factor system uncovered by study of duplicated salmonid fish genomes.Molecular biology and evolution · 2013Article
- Comparative analysis of virus-host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase.Methods (San Diego, Calif.) · 2012Article
- A computational framework for boosting confidence in high-throughput protein-protein interaction datasets.Genome biology · 2012Article
- GWIDD: Genome-wide protein docking database.Nucleic acids research · 2010Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 1 institution in 1 country.
Funding
Abstract
'Protinfo PPC' (Prediction of Protein Complex) is a web server that predicts atomic level structures of interacting proteins from their amino-acid sequences. It uses the interolog method to search for experimental protein complex structures that are homologous to the input sequences submitted by a user. These structures are then used as starting templates to generate protein complex models, which are returned to the user in Protein Data Bank format via email. The server supports modeling of both homo and hetero multimers and generally produces full atomic level models (including insertion/deletion regions) of protein complexes as long as at least one putative homologous template for the query sequences is found. The modeling pipeline behind Protinfo PPC has been rigorously benchmarked and proven to produce highly accurate protein complex models. The fully automated all atom comparative modeling service for protein complexes provided by Protinfo PPC server offers wide capabilities ranging from prediction of protein complex interactions to identification of possible interaction sites, which will be useful for researchers studying these topics. The Protinfo PPC web server is available at http://protinfo.compbio.washington.edu/ppc/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.