Evidence map›Paper›PMID 19419758›Full record

ArticleGynecologic oncology2009

Polymorphisms in TCEAL7 and risk of epithelial ovarian cancer.

Abraham Peedicayil, Robert A Vierkant, Vijayalakshmi Shridhar, Joellen M Schildkraut, Sebastian Armasu, Lynn C Hartmann, Brooke L Fridley, Julie M Cunningham, Catherine M Phelan, Thomas A Sellers and 1 more

Open access · greenAbstract readMulticenter Study
In one paragraph

Article in Gynecologic oncology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Penalized logistic regression based on L1/2 penalty for high-dimensional DNA methylation data.Technology and health care : official journal of the European Society for Engineering and Medicine · 2020
    Article
  3. Article
  4. Article
  5. Global ovarian cancer health disparities.Gynecologic oncology · 2013
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Abraham PeedicayilDepartment of Health Sciences Research, Mayo Clinic College of Medicine, 200 First Street SW, Rochester, MN 55905, USA.
Robert A Vierkant
Vijayalakshmi Shridhar
Joellen M Schildkraut
Sebastian Armasu
Lynn C Hartmann
Brooke L Fridley
Julie M Cunningham
Catherine M Phelan
Thomas A Sellers
Ellen L Goode
Mayo Clinic · USMoffitt Cancer Center · USDuke University · US

Funding

Genetic Variation in the NF-kappaB Pathway and Ovarian Cancer EtiologyR01CA122443 · NCI · MAYO CLINIC ROCHESTER · PI GOODE, ELLEN L. · 2007 to 2012
$2.7M
Regulation of p53 function by DaxxR01CA088868 · NCI · UNIVERSITY OF PENNSYLVANIA · PI YANG, XIAOLU · 2001 to 2012
$2.6M
NCI NIH HHS R01 CA088868NCI NIH HHS R01 CA122443NCI NIH HHS R01 CA88868
6 · The paper itself

Abstract

objectiveWe have previously shown that TCEAL7 (transcription elongation factor A (SII)-like 7) is epigenetically down-regulated in the majority of epithelial ovarian cancers. We now examine the hypothesis that inherited alterations in TCEAL7 play a role in the etiology of ovarian cancer.

methodsA two-site case-control study of 930 cases of ovarian cancer and 1037 controls, frequency-matched on residence, age and race, was conducted. Six informative SNPs (tagSNPs and putative-functional SNPs) were genotyped. Logistic regression was used to adjust for potential confounders and determine if inherited variation at this locus was associated with risk of ovarian cancer in general and among cases with invasive disease and serous histology. Gene-level principal component and haplotype analyses were also conducted.

resultsNone of the SNPs or haplotypes studied were significantly associated with ovarian cancer risk overall. However, among the 440 invasive serous cases, the minor alleles for three correlated SNPs were significantly associated with reduced risk (p-values<0.05), summarized gene-level variation was weakly associated with reduced risk (p-value=0.05), and the predominant haplotype was less common among cases than controls (0.36 v 0.40, p-value=0.05), consistent with single-SNP results.

conclusionTCEAL7 polymorphisms may play a role in the development of invasive serous ovarian cancers. Follow-up molecular and replication studies are warranted.

Indexed as

AdultAgedAllelesCase-Control StudiesFemaleGenetic Predisposition to DiseaseHumansMiddle AgedNeoplasm StagingNuclear ProteinsOvarian NeoplasmsPolymorphism, Single NucleotideYoung AdultNuclear ProteinsTCEAL7 protein, human

Identifiers

PMID19419758
PMCPMC2758312
OpenAlexW2024393361

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.