Evidence map›Paper›PMID 19419240›Full record

ArticlePLoS biology2009

Evolution of complex RNA polymerases: the complete archaeal RNA polymerase structure.

Yakov Korkhin, Ulug M Unligil, Otis Littlefield, Pamlea J Nelson, David I Stuart, Paul B Sigler, Stephen D Bell, Nicola G A Abrescia

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 127 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. BEAN and HABAS: Polyphyletic insertions in the DNA-directed RNA polymerase.Protein science : a publication of the Protein Society · 2024
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Archaeal transcription.Transcription · 2020
    Review
  17. Review
  18. Review
  19. The cutting edge of archaeal transcription.Emerging topics in life sciences · 2018
    Article
  20. Review

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Yakov KorkhinDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA.
Ulug M Unligil
Otis Littlefield
Pamlea J Nelson
David I Stuart
Paul B Sigler
Stephen D Bell
Nicola G A Abrescia
Howard Hughes Medical Institute · USCentre for Human Genetics · GBUniversity of Oxford · GB

Funding

Howard Hughes Medical InstituteMedical Research Council G0500365
6 · The paper itself

Abstract

The archaeal RNA polymerase (RNAP) shares structural similarities with eukaryotic RNAP II but requires a reduced subset of general transcription factors for promoter-dependent initiation. To deepen our knowledge of cellular transcription, we have determined the structure of the 13-subunit DNA-directed RNAP from Sulfolobus shibatae at 3.35 Å resolution. The structure contains the full complement of subunits, including RpoG/Rpb8 and the equivalent of the clamp-head and jaw domains of the eukaryotic Rpb1. Furthermore, we have identified subunit Rpo13, an RNAP component in the order Sulfolobales, which contains a helix-turn-helix motif that interacts with the RpoH/Rpb5 and RpoA'/Rpb1 subunits. Its location and topology suggest a role in the formation of the transcription bubble.

Indexed as

Evolution, MolecularAmino Acid SequenceArchaeal ProteinsCrystallography, X-RayDNA-Directed RNA PolymerasesModels, MolecularMolecular Sequence DataProtein SubunitsRNA, ArchaealSulfolobusTranscription, GeneticArchaeal ProteinsDNA-Directed RNA PolymerasesProtein SubunitsRNA, Archaeal

Identifiers

PMID19419240
PMCPMC2675907
OpenAlexW2082286024

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.