Evidence map›Paper›PMID 19417104›Full record

ArticleGenes & development2009

SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay.

Akio Yamashita, Natsuko Izumi, Isao Kashima, Tetsuo Ohnishi, Bonnie Saari, Yukiko Katsuhata, Reiko Muramatsu, Tomoko Morita, Akihiro Iwamatsu, Takahisa Hachiya and 4 more

Open access · diamondAbstract read
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Article in Genes & development, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 152 papers.

0numbers the graph read from it
0cells of the map it votes in
152citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

152 citing papers in PubMed, 244 citations in OpenAlex.

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  12. Sample Preparation for Electron Cryo-Microscopy of Macromolecular Machines.Advances in experimental medicine and biology · 2024
    Article
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  20. Nonsense-mediated mRNA decay and metal ion homeostasis and detoxification in Saccharomyces cerevisiae.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2022
    Review

92 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Akio YamashitaDepartment of Molecular Biology, Yokohama City University School of Medicine, Yokohama, Japan. yamasita@yokohama-cu.ac.jp
Natsuko Izumi
Isao Kashima
Tetsuo Ohnishi
Bonnie Saari
Yukiko Katsuhata
Reiko Muramatsu
Tomoko Morita
Akihiro Iwamatsu
Takahisa Hachiya
Rie Kurata
Hisashi Hirano
Philip Anderson
Shigeo Ohno
Yokohama City University · JPUniversity of Wisconsin–Madison · USMax Planck Institute for Developmental Biology · DEMedical & Biological Laboratories (Japan) · JPProtein Research Foundation · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism that detects and degrades mRNAs containing premature translation termination codons (PTCs). SMG-1 and Upf1 transiently form a surveillance complex termed "SURF" that includes eRF1 and eRF3 on post-spliced mRNAs during recognition of PTC. If an exon junction complex (EJC) exists downstream from the SURF complex, SMG-1 phosphorylates Upf1, the step that is a rate-limiting for NMD. We provide evidence of an association between the SURF complex and the ribosome in association with mRNPs, and we suggest that the SURF complex functions as a translation termination complex during NMD. We identified SMG-8 and SMG-9 as novel subunits of the SMG-1 complex. SMG-8 and SMG-9 suppress SMG-1 kinase activity in the isolated SMG-1 complex and are involved in NMD in both mammals and nematodes. SMG-8 recruits SMG-1 to the mRNA surveillance complex, and inactivation of SMG-8 induces accumulation of a ribosome:Upf1:eRF1:eRF3:EJC complex on mRNP, which physically bridges the ribosome and EJC through eRF1, eRF3, and Upf1. These results not only reveal the regulatory mechanism of SMG-1 kinase but also reveal the sequential remodeling of the ribosome:SURF complex to the predicted DECID (DECay InDucing) complex, a ribosome:SURF:EJC complex, as a mechanism of in vivo PTC discrimination.

Indexed as

Gene Expression Regulation, EnzymologicAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCodon, NonsenseGlutathioneHeLa CellsHumansMultienzyme ComplexesPhosphatidylinositol 3-KinasesPhosphorylationProtein KinasesProtein Serine-Threonine KinasesProtein SubunitsRibosomesRNA Stability4-methoxy-1-tyrosyl-gamma-glutamyl-cysteinyl-glycineCaenorhabditis elegans ProteinsCodon, NonsenseGlutathioneMultienzyme ComplexesPhosphatidylinositol 3-KinasesProtein KinasesProtein Serine-Threonine KinasesProtein SubunitsSMG-1 protein, C elegansSMG1 protein, human

Identifiers

PMID19417104
PMCPMC2682953
OpenAlexW2114036672

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.