ArticleNucleic acids research2009
Web API for biology with a workflow navigation system.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
16 citing papers in PubMed.
- DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data.Nucleic acids research · 2019Article
- DNA Data Bank of Japan: 30th anniversary.Nucleic acids research · 2018Article
- DNA Data Bank of Japan.Nucleic acids research · 2017Article
- DNA data bank of Japan (DDBJ) progress report.Nucleic acids research · 2016Article
- The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.Nucleic acids research · 2015Article
- DDBJ progress report: a new submission system for leading to a correct annotation.Nucleic acids research · 2014Article
- DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data.DNA research : an international journal for rapid publication of reports on genes and genomes · 2013Article
- MAPI: a software framework for distributed biomedical applications.Journal of biomedical semantics · 2013Article
- Next generation sequence analysis and computational genomics using graphical pipeline workflows.Genes · 2012Article
- The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.Nucleic acids research · 2012Article
- The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.Journal of biomedical semantics · 2011Article
- Semantics-based composition of EMBOSS services.Journal of biomedical semantics · 2011Article
- DDBJ progress report.Nucleic acids research · 2011Article
- myExperiment: a repository and social network for the sharing of bioinformatics workflows.Nucleic acids research · 2010Article
- TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services.Nucleic acids research · 2010Article
- Bio-jETI: a framework for semantics-based service composition.BMC bioinformatics · 2009Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
DNA Data Bank of Japan (DDBJ) provides Web-based systems for biological analysis, called Web APIs for biology (WABI). So far, we have developed over 20 SOAP services and several workflows that consist of a series of method invocations. In this article, we present newly developed services of WABI, that is, REST-based Web services, additional workflows and a workflow navigation system. Each Web service and workflow can be used as a complete service or a building block for programmers to construct more complex information processing systems. The workflow navigation system aims to help non-programming biologists perform analysis tasks by providing next applicable services on Web browsers according to the output of a previously selected service. With this function, users can apply multiple services consecutively only by following links without any programming or manual copy-and-paste operations on Web browsers. The listed services are determined automatically by the system referring to the dictionaries of service categories, the input/output types of services and HTML tags. WABI and the workflow navigation system are freely accessible at http://www.xml.nig.ac.jp/index.html and http://cyclamen.ddbj.nig.ac.jp/, respectively.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.