Evidence map›Paper›PMID 19416942›Full record

ArticleGenetics2009

Polymorphic genes of major effect: consequences for variation, selection and evolution in Arabidopsis thaliana.

John R Stinchcombe, Cynthia Weinig, Katy D Heath, Marcus T Brock, Johanna Schmitt

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Correlational selection in the age of genomics.Nature ecology & evolution · 2021
    Review
  4. Article
  5. Article
  6. Large-effect flowering time mutations reveal conditionally adaptive paths through fitness landscapes inProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Article
  8. Antagonistic selection and pleiotropy constrain the evolution of plant chemical defenses.Evolution; international journal of organic evolution · 2019
    Article
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  10. Article
  11. Article
  12. Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

John R StinchcombeDepartment of Ecology and Evolutionary Biology, Unversity of Toronto, Toronto, Ontario.
Cynthia Weinig
Katy D Heath
Marcus T Brock
Johanna Schmitt
University of Wyoming · USBrown University · USUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The importance of genes of major effect for evolutionary trajectories within and among natural populations has long been the subject of intense debate. For example, if allelic variation at a major-effect locus fundamentally alters the structure of quantitative trait variation, then fixation of a single locus can have rapid and profound effects on the rate or direction of subsequent evolutionary change. Using an Arabidopsis thaliana RIL mapping population, we compare G-matrix structure between lines possessing different alleles at ERECTA, a locus known to affect ecologically relevant variation in plant architecture. We find that the allele present at ERECTA significantly alters G-matrix structure-in particular the genetic correlations between branch number and flowering time traits-and may also modulate the strength of natural selection on these traits. Despite these differences, however, when we extend our analysis to determine how evolution might differ depending on the ERECTA allele, we find that predicted responses to selection are similar. To compare responses to selection between allele classes, we developed a resampling strategy that incorporates uncertainty in estimates of selection that can also be used for statistical comparisons of G matrices.

Indexed as

Polymorphism, GeneticAllelesAnalysis of VarianceArabidopsisArabidopsis ProteinsChromosome MappingEvolution, MolecularFlowersGenetic VariationGenome, PlantModels, GeneticPhenotypePrincipal Component AnalysisProtein Serine-Threonine KinasesReceptors, Cell SurfaceSelection, GeneticArabidopsis ProteinsER protein, ArabidopsisProtein Serine-Threonine KinasesReceptors, Cell Surface

Identifiers

PMID19416942
PMCPMC2710169
OpenAlexW2138795746

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.