Evidence map›Paper›PMID 19416921›Full record

SynthesisProceedings of the National Academy of Sciences of the United States of America2009

Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.

Laura J Scott, Pierandrea Muglia, Xiangyang Q Kong, Weihua Guan, Matthew Flickinger, Ruchi Upmanyu, Federica Tozzi, Jun Z Li, Margit Burmeister, Devin Absher and 23 more

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 154 papers, 11 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
154citing papers in PubMed, 11 pooled it
20.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

154 citing papers in PubMed, 11 syntheses or guidelines pooled it, 319 citations in OpenAlex.

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94 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 14 institutions in 5 countries.

Laura J ScottDepartment of Biostatistics and Center for Statistical Genetics, School of Public Health, University of Michigan, Ann Arbor, MI 48109, USA.
Pierandrea Muglia
Xiangyang Q Kong
Weihua Guan
Matthew Flickinger
Ruchi Upmanyu
Federica Tozzi
Jun Z Li
Margit Burmeister
Devin Absher
Robert C Thompson
Clyde Francks
Fan Meng
Athos Antoniades
Audrey M Southwick
Alan F Schatzberg
William E Bunney
Jack D Barchas
Edward G Jones
Richard Day
Keith Matthews
Peter McGuffin
John S Strauss
James L Kennedy
Lefkos Middleton
Allen D Roses
Stanley J Watson
John B Vincent
Richard M Myers
Ann E Farmer
Huda Akil
Daniel K Burns
Michael Boehnke
University of Michigan–Ann Arbor · USUniversity of Dundee · GBGlaxoSmithKline (Italy) · ITGlaxoSmithKline (Netherlands) · NLHudsonAlpha Institute for Biotechnology · USGlaxoSmithKline (United Kingdom) · GBImperial College London · GBStanford University · USUniversity of Toronto · CACentre for Addiction and Mental Health · CACornell University · USGlaxoSmithKline (United States) · USUniversity of California, Davis · USUniversity of California, Irvine · US

Funding

University of Michigan Training Program in Genomic ScienceT32HG000040 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Sebastian Zoellner · 1995 to 2026
$16.4M
Identifying Genes for Type 2 Diabetes:FUSIONR01DK062370 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BOEHNKE, MICHAEL L, SCOTT, LAURA J. · 2003 to 2025
$6.7M
NHGRI NIH HHS T32 HG000040NIDDK NIH HHS R01 DK062370Wellcome Trust
6 · The paper itself

Abstract

Bipolar disorder (BP) is a disabling and often life-threatening disorder that affects approximately 1% of the population worldwide. To identify genetic variants that increase the risk of BP, we genotyped on the Illumina HumanHap550 Beadchip 2,076 bipolar cases and 1,676 controls of European ancestry from the National Institute of Mental Health Human Genetics Initiative Repository, and the Prechter Repository and samples collected in London, Toronto, and Dundee. We imputed SNP genotypes and tested for SNP-BP association in each sample and then performed meta-analysis across samples. The strongest association P value for this 2-study meta-analysis was 2.4 x 10(-6). We next imputed SNP genotypes and tested for SNP-BP association based on the publicly available Affymetrix 500K genotype data from the Wellcome Trust Case Control Consortium for 1,868 BP cases and a reference set of 12,831 individuals. A 3-study meta-analysis of 3,683 nonoverlapping cases and 14,507 extended controls on >2.3 M genotyped and imputed SNPs resulted in 3 chromosomal regions with association P approximately 10(-7): 1p31.1 (no known genes), 3p21 (>25 known genes), and 5q15 (MCTP1). The most strongly associated nonsynonymous SNP rs1042779 (OR = 1.19, P = 1.8 x 10(-7)) is in the ITIH1 gene on chromosome 3, with other strongly associated nonsynonymous SNPs in GNL3, NEK4, and ITIH3. Thus, these chromosomal regions harbor genes implicated in cell cycle, neurogenesis, neuroplasticity, and neurosignaling. In addition, we replicated the reported ANK3 association results for SNP rs10994336 in the nonoverlapping GSK sample (OR = 1.37, P = 0.042). Although these results are promising, analysis of additional samples will be required to confirm that variant(s) in these regions influence BP risk.

Indexed as

Genome, HumanBipolar DisorderChromosomes, Human, Pair 1Chromosomes, Human, Pair 3Chromosomes, Human, Pair 5EuropeGenome-Wide Association StudyHumans

Identifiers

PMID19416921
PMCPMC2678639
OpenAlexW2033276865

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.