Evidence map›Paper›PMID 19416877›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Functional electric field changes in photoactivated proteins revealed by ultrafast Stark spectroscopy of the Trp residues.

Jérémie Léonard, Erwin Portuondo-Campa, Andrea Cannizzo, Frank van Mourik, Gert van der Zwan, Jörg Tittor, Stefan Haacke, Majed Chergui

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Ultrafast terahertz Stark spectroscopy reveals the excited-state dipole moments of retinal in bacteriorhodopsin.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. The feasibility of coherent energy transfer in microtubules.Journal of the Royal Society, Interface · 2014
    Article
  7. Article
  8. Article
  9. Article
  10. Aborted double bicycle-pedal isomerization with hydrogen bond breaking is the primary event of bacteriorhodopsin proton pumping.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jérémie LéonardInstitut de Physique et Chimie des Matériaux de Strasbourg, Université de Strasbourg et Centre National de la Recherche Scientifique, UMR 7504, 23 Rue du Loess BP43, 67034 Strasbourg Cedex 2, France. jeremie.leonard@ipcms.u-strasbg.fr
Erwin Portuondo-Campa
Andrea Cannizzo
Frank van Mourik
Gert van der Zwan
Jörg Tittor
Stefan Haacke
Majed Chergui

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ultrafast transient absorption spectroscopy of wild-type bacteriorhodopsin (WT bR) and 2 tryptophan mutants (W86F and W182F) is performed with visible light excitation (pump) and UV probe. The aim is to investigate the photoinduced change in the charge distribution with 50-fs time resolution by probing the effects on the tryptophan absorption bands. A systematic, quantitative comparison of the transient absorption of the 3 samples is carried out. The main result is the absence in the W86F mutant of a transient induced absorption band observed at approximately 300-310 nm in WT bR and W182F. A simple model describing the dipolar interaction of the retinal moiety with the 2 tryptophan residues of interest allows us to reproduce the dominant features of the transient signals observed in the 3 samples at ultrashort pump-probe delays. In particular, we show that Trp(86) undergoes a significant Stark shift induced by the transient retinal dipole moment. The corresponding transient signal can be isolated by direct subtraction of experimental data obtained for WT bR and W86F. It shows an instantaneous rise, followed by a decay over approximately 500 fs corresponding to the isomerization time. Interestingly, it does not decay back to zero, thus revealing a change in the local electrostatic environment that remains long after isomerization, in the K intermediate state of the protein cycle. The comparison of WT bR and W86F also leads to a revised interpretation of the overall transient UV absorption of bR.

Indexed as

LightBacteriorhodopsinsBiophysicsElectrochemistryMolecular ConformationMolecular StructureMutationPhotochemistrySpectrophotometrySpectrophotometry, UltravioletTryptophanUltraviolet RaysBacteriorhodopsinsTryptophan

Identifiers

PMID19416877
PMCPMC2683101

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.