Evidence map›Paper›PMID 19416867›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

The transcriptome of human CD34+ hematopoietic stem-progenitor cells.

Yeong C Kim, Qingfa Wu, Jun Chen, Zhenyu Xuan, Yong-Chul Jung, Michael Q Zhang, Janet D Rowley, San Ming Wang

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. The Role ofCancers · 2020
    Review
  3. Article
  4. Hematopoietic Stem/Progenitor Cells and the Pathogenesis of HIV/AIDS.Frontiers in cellular and infection microbiology · 2020
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Therapeutic effect of lung mixed culture-derived epithelial cells on lung fibrosis.Laboratory investigation; a journal of technical methods and pathology · 2014
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Comprehensive microRNA expression profiling of the hematopoietic hierarchy.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Yeong C KimDepartment of Medicine, Division of Medical Genetics, Center for Functional Genomics, Evanston Northwestern Healthcare Research Institute, Northwestern University Feinberg School of Medicine, Evanston, IL 60201, USA.
Qingfa Wu
Jun Chen
Zhenyu Xuan
Yong-Chul Jung
Michael Q Zhang
Janet D Rowley
San Ming Wang
Northwestern University · USCold Spring Harbor Laboratory · USUniversity of Chicago · US

Funding

PROTEIN CODING GENES IN THE HUMAN GENOMER01HG001696 · NHGRI · UNIVERSITY OF TEXAS DALLAS · PI ZHANG, MICHAEL Q · 1997 to 2010
$5.1M
REPROGRAMMING BY mRNA CLEARANCE: THE MAT-TO-ZYG TRANSITIONR01GM084198 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI LIN, RUEYLING, ZHANG, MICHAEL Q · 2009 to 2018
$2.8M
Identification of novel genes in human genomeR01HG002600 · NHGRI · UNIVERSITY OF CHICAGO · PI WANG, SAN MING · 2003 to 2005
$1.7M
MAPPING AND CLONING TRANSLOCATION BREAKPOINTSR01CA084405 · NCI · UNIVERSITY OF CHICAGO · PI ROWLEY, JANET D · 2000 to 2004
$1.5M
NCI NIH HHS CA84405NCI NIH HHS R01 CA084405NHGRI NIH HHS R01 HG001696NHGRI NIH HHS R01 HG002600NHGRI NIH HHS R01HG002600NIGMS NIH HHS R01 GM084198
6 · The paper itself

Abstract

Studying gene expression at different hematopoietic stages provides insights for understanding the genetic basis of hematopoiesis. We analyzed gene expression in human CD34(+) hematopoietic cells that represent the stem-progenitor population (CD34(+) cells). We collected >459,000 transcript signatures from CD34(+) cells, including the de novo-generated 3' ESTs and the existing sequences of full-length cDNAs, ESTs, and serial analysis of gene expression (SAGE) tags, and performed an extensive annotation on this large set of CD34(+) transcript sequences. We determined the genes expressed in CD34(+) cells, verified the known genes and identified the new genes of different functional categories involved in hematopoiesis, dissected the alternative gene expression including alternative transcription initiation, splicing, and adenylation, identified the antisense and noncoding transcripts, determined the CD34(+) cell-specific gene expression signature, and developed the CD34(+) cell-transcription map in the human genome. Our study provides a current view on gene expression in human CD34(+) cells and reveals that early hematopoiesis is an orchestrated process with the involvement of over half of the human genes distributed in various functions. The data generated from our study provide a comprehensive and uniform resource for studying hematopoiesis and stem cell biology.

Indexed as

Antigens, CD34Gene Expression ProfilingHematopoietic Stem CellsBase SequenceDNA, ComplementaryExpressed Sequence TagsGenesGenetic MarkersHematopoiesisHumansMolecular Sequence DataAntigens, CD34DNA, ComplementaryGenetic Markers

Identifiers

PMID19416867
PMCPMC2688877
OpenAlexW2102057407

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.