Evidence map›Paper›PMID 19416841›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

7SK snRNP/P-TEFb couples transcription elongation with alternative splicing and is essential for vertebrate development.

Matjaz Barboric, Tina Lenasi, Hui Chen, Eric B Johansen, Su Guo, B Matija Peterlin

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 113 papers.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

113 citing papers in PubMed, 158 citations in OpenAlex.

  1. Article
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  4. Quantifying MgbioRxiv : the preprint server for biology · 2026
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  11. Science advances · 2023
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. [7SK truncation at 128-179 nt suppresses embryonic stem cell proliferationNan fang yi ke da xue xue bao = Journal of Southern Medical University · 2021
    Article
  20. CDK9 keeps RNA polymerase II on track.Cellular and molecular life sciences : CMLS · 2021
    Review

53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Matjaz BarboricDepartment of Medicine, Rosalind Russell Medical Research Center, University of California, San Francisco, CA 94143-0703, USA. mbarboric@gmail.com
Tina Lenasi
Hui Chen
Eric B Johansen
Su Guo
B Matija Peterlin
University of California, San Francisco · USUCSF Helen Diller Family Comprehensive Cancer Center · US

Funding

Translational InformaticsP30CA082103 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jennifer Leigh Clarke · 1999 to 2026
$209.7M
X-ray Screening and Rapid Structure DeterminationP50GM082250 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRANKEL, ALAN D · 2007 to 2018
$48.8M
Roles of N-TEF and P-TEBb in HIV LatencyP01AI058708 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI NORTH, THOMAS W · 2004 to 2009
$11.6M
Development of Dopaminergic Neurons in ZebrafishR01NS042626 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GUO, SU · 2003 to 2012
$3.4M
NCI NIH HHS P30 CA082103NCI NIH HHS P30 CA82103NIAID NIH HHS AI058708NIAID NIH HHS P01 AI058708NIGMS NIH HHS GM082250NIGMS NIH HHS P50 GM082250NINDS NIH HHS NS042626NINDS NIH HHS R01 NS042626
6 · The paper itself

Abstract

Eukaryotic gene expression is commonly controlled at the level of RNA polymerase II (RNAPII) pausing subsequent to transcription initiation. Transcription elongation is stimulated by the positive transcription elongation factor b (P-TEFb) kinase, which is suppressed within the 7SK small nuclear ribonucleoprotein (7SK snRNP). However, the biogenesis and functional significance of 7SK snRNP remain poorly understood. Here, we report that LARP7, BCDIN3, and the noncoding 7SK small nuclear RNA (7SK) are vital for the formation and stability of a cell stress-resistant core 7SK snRNP. Our functional studies demonstrate that 7SK snRNP is not only critical for controlling transcription elongation, but also for regulating alternative splicing of pre-mRNAs. Using a transient expression splicing assay, we find that 7SK snRNP disintegration promotes inclusion of an alternative exon via the increased occupancy of P-TEFb, Ser2-phosphorylated (Ser2-P) RNAPII, and the splicing factor SF2/ASF at the minigene. Importantly, knockdown of larp7 or bcdin3 orthologues in zebrafish embryos destabilizes 7SK and causes severe developmental defects and aberrant splicing of analyzed transcripts. These findings reveal a key role for P-TEFb in coupling transcription elongation with alternative splicing, and suggest that maintaining core 7SK snRNP is essential for vertebrate development.

Indexed as

Alternative SplicingAmino Acid MotifsAnimalsGene Expression Regulation, DevelopmentalGenetic VariationModels, GeneticPhosphorylationPositive Transcriptional Elongation Factor BRibonuclease, PancreaticRibonucleoproteins, Small NuclearRNA, MessengerRNA Polymerase IITranscription, GeneticVertebratesZebrafishPositive Transcriptional Elongation Factor BRibonuclease, PancreaticRibonucleoproteins, Small NuclearRNA, MessengerRNA Polymerase II

Identifiers

PMID19416841
PMCPMC2683122
OpenAlexW2060200124

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.