Evidence map›Paper›PMID 19416821›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Catalytically-active complex of HIV-1 integrase with a viral DNA substrate binds anti-integrase drugs.

Akram Alian, Sarah L Griner, Vicki Chiang, Manuel Tsiang, Gregg Jones, Gabriel Birkus, Romas Geleziunas, Andrew D Leavitt, Robert M Stroud

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Fabs enable single particle cryoEM studies of small proteins.Structure (London, England : 1993) · 2012
    Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Structure-based modeling of the functional HIV-1 intasome and its inhibition.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Akram AlianDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94158, USA.
Sarah L Griner
Vicki Chiang
Manuel Tsiang
Gregg Jones
Gabriel Birkus
Romas Geleziunas
Andrew D Leavitt
Robert M Stroud
Gilead Sciences (United States) · USUniversity of California, San Francisco · USStanford University · US

Funding

X-ray Screening and Rapid Structure DeterminationP50GM082250 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRANKEL, ALAN D · 2007 to 2018
$48.8M
NIGMS NIH HHS P50 GM082250
6 · The paper itself

Abstract

HIV-1 integration into the host cell genome is a multistep process catalyzed by the virally-encoded integrase (IN) protein. In view of the difficulty of obtaining a stable DNA-bound IN at high concentration as required for structure determination, we selected IN-DNA complexes that form disulfide linkages between 5'-thiolated DNA and several single mutations to cysteine around the catalytic site of IN. Mild reducing conditions allowed for selection of the most thermodynamically-stable disulfide-linked species. The most stable complexes induce tetramer formation of IN, as happens during the physiological integration reaction, and are able to catalyze the strand transfer step of retroviral integration. One of these complexes also binds strand-transfer inhibitors of HIV antiviral drugs, making it uniquely valuable among the mutants of this set for understanding portions of the integration reaction. This novel complex may help define substrate interactions and delineate the mechanism of action of known integration inhibitors.

Indexed as

CatalysisDisulfidesDNA, ViralHIV-1HIV IntegraseHIV Integrase InhibitorsMutagenesis, Site-DirectedMutationProtein BindingProtein MultimerizationDisulfidesDNA, ViralHIV IntegraseHIV Integrase Inhibitorsp31 integrase protein, Human immunodeficiency virus 1

Identifiers

PMID19416821
PMCPMC2688900
OpenAlexW2030117660

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.