Evidence map›Paper›PMID 19416066›Full record

ReviewAnnual review of biophysics2009

A complex assembly landscape for the 30S ribosomal subunit.

Michael T Sykes, James R Williamson

Abstract readReview
In one paragraph

Review in Annual review of biophysics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed.

  1. Article
  2. Article
  3. Mechanistic insights intobioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Ribosome Stoichiometry: From Form to Function.Trends in biochemical sciences · 2019
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Michael T SykesDepartment of Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA. sykes@scripps.edu
James R Williamson

Funding

Assembly of E. coli ribosomes in vitro and in cellsR37GM053757 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI WILLIAMSON, JAMES R · 2008 to 2017
$5.1M
STRUCTURE AND ASSEMBLY OF 30 S CENTRAL DOMAIN RNPSR01GM053757 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI WILLIAMSON, JAMES R · 1996 to 2020
$5.0M
Assembly Properties of the 50S Ribosomal Subunit Under Pertubation ConditionsF32GM083510 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI SYKES, MICHAEL TIMOTHY · 2008 to 2009
$97k
NIGMS NIH HHS F32 GM083510NIGMS NIH HHS F32-GM083510NIGMS NIH HHS R01 GM053757NIGMS NIH HHS R37 GM053757NIGMS NIH HHS R37-GM053757
6 · The paper itself

Abstract

The ribosome is a complex macromolecular machine responsible for protein synthesis in the cell. It consists of two subunits, each of which contains both RNA and protein components. Ribosome assembly is subject to intricate regulatory control and is aided by a multitude of assembly factors in vivo, but can also be carried out in vitro. The details of the assembly process remain unknown even in the face of atomic structures of the entire ribosome and after more than three decades of research. Some of the earliest research on ribosome assembly produced the Nomura assembly map of the small subunit, revealing a hierarchy of protein binding dependencies for the 20 proteins involved and suggesting the possibility of a single intermediate. Recent work using a combination of RNA footprinting and pulse-chase quantitative mass spectrometry paints a picture of small subunit assembly as a dynamic and varied landscape, with sequential and hierarchical RNA folding and protein binding events finally converging on complete subunits. Proteins generally lock tightly into place in a 5' to 3' direction along the ribosomal RNA, stabilizing transient RNA conformations, while RNA folding and the early stages of protein binding are initiated from multiple locations along the length of the RNA.

Indexed as

Models, ChemicalModels, MolecularBinding SitesComputer SimulationProtein BindingProtein ConformationRibosomal ProteinsRibosome Subunits, SmallRibosomal Proteins

Identifiers

PMID19416066
PMCPMC5654522

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.