Evidence map›Paper›PMID 19415718›Full record

ArticleHepatology (Baltimore, Md.)2009

Protein or amino acid deprivation differentially regulates the hepatic forkhead box protein A (FOXA) genes through an activating transcription factor-4-independent pathway.

Nan Su, Michelle M Thiaville, Keytam Awad, Altin Gjymishka, Jason O Brant, Thomas P Yang, Michael S Kilberg

Open access · greenAbstract read
In one paragraph

Article in Hepatology (Baltimore, Md.), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
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  6. Asparagine synthetase: regulation by cell stress and involvement in tumor biology.American journal of physiology. Endocrinology and metabolism · 2013
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Nan SuDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine, Gainesville, FL 32610-0245, USA.
Michelle M Thiaville
Keytam Awad
Altin Gjymishka
Jason O Brant
Thomas P Yang
Michael S Kilberg
Florida College · USUniversity of Florida · US

Funding

NUTRITIONAL CONTROL OF ASPARAGINE SYNTHETASER01DK052064 · NIDDK · UNIVERSITY OF FLORIDA · PI KILBERG, MICHAEL S. · 1997 to 2010
$3.4M
Nutritional Control of Transcription Factor ExpressionR01DK070647 · NIDDK · UNIVERSITY OF FLORIDA · PI KILBERG, MICHAEL S. · 2006 to 2010
$1.4M
NIDDK NIH HHS DK-52064NIDDK NIH HHS DK70647NIDDK NIH HHS R01 DK052064NIDDK NIH HHS R01 DK070647
6 · The paper itself

Abstract

The FOXA (forkhead box A) proteins (FOXA1, FOXA2, and FOXA3) play a critical role in the development of the liver, and they also regulate metabolism in adult hepatic tissue. The liver responds to changes in nutrient availability by initiating a number of stress signaling pathways. The present studies demonstrated that in mouse dams fed a low-protein diet hepatic expression of FOXA2 and FOXA3 messenger RNA, but not FOXA1, was induced. Conversely, fetal liver did not exhibit this regulation. Amino acid deprivation of HepG2 hepatoma cells also enhanced transcription from the FOXA2 and FOXA3 genes. In contrast, endoplasmic reticulum stress inhibited the expression of FOXA1, only slightly induced FOXA2, and had no effect on FOXA3. The FOXA2 and FOXA3 messenger RNA induction by amino acid deprivation did not require activating transcription factor 4, a critical component of the conventional amino acid response (AAR) pathway, but their induction was partially dependent on CCAAT/enhancer-binding protein beta. Simultaneous knockdown of both FOXA2 and FOXA3 by small interfering RNA did not affect the activation of other amino acid responsive genes, suggesting that the FOXA proteins are not required for the known AAR pathway. Collectively, the results document that the hepatic FOXA family of genes are differentially regulated by amino acid availability.

Indexed as

Transcription, GeneticActivating Transcription Factor 4Amino AcidsAnimalsCarcinoma, HepatocellularCells, CulturedDiet, Protein-RestrictedEndoplasmic ReticulumHepatocyte Nuclear Factor 3-alphaHepatocyte Nuclear Factor 3-betaHepatocyte Nuclear Factor 3-gammaHumansLiverLiver NeoplasmsMiceMice, Inbred C57BLActivating Transcription Factor 4Amino AcidsFoxa1 protein, mouseFoxa2 protein, mouseFoxa3 protein, mouseHepatocyte Nuclear Factor 3-alphaHepatocyte Nuclear Factor 3-betaHepatocyte Nuclear Factor 3-gammaProteins

Identifiers

PMID19415718
PMCPMC3594789
OpenAlexW2024386947

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.