Evidence map›Paper›PMID 19414991›Full record

ArticleAIDS (London, England)2009

Cross-sectional characterization of HIV-1 env compartmentalization in cerebrospinal fluid over the full disease course.

Patrick R Harrington, Gretja Schnell, Scott L Letendre, Kimberly Ritola, Kevin Robertson, Colin Hall, Christina L Burch, Cassandra B Jabara, Dominic T Moore, Ronald J Ellis and 2 more

Open access · greenAbstract readMulticenter Study
In one paragraph

Article in AIDS (London, England), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 105 citations in OpenAlex.

  1. Trial
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  4. Review
  5. Article
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  9. Review
  10. Cerebrospinal Fluid Viral Load Across the Spectrum of Untreated Human Immunodeficiency Virus Type 1 (HIV-1) Infection: A Cross-Sectional Multicenter Study.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2022
    Article
  11. Review
  12. Review
  13. Review
  14. Neurocognitive Complications of Pediatric HIV Infections.Current topics in behavioral neurosciences · 2021
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Global HIV neurology: a comprehensive review.AIDS (London, England) · 2019
    Review
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Patrick R HarringtonLineberger Comprehensive Cancer Center and UNC Center for AIDS Research, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, North Carolina 27599-7295, USA.
Gretja Schnell
Scott L Letendre
Kimberly Ritola
Kevin Robertson
Colin Hall
Christina L Burch
Cassandra B Jabara
Dominic T Moore
Ronald J Ellis
Richard W Price
Ronald Swanstrom
University of North Carolina at Chapel Hill · USUniversity of California, San Diego · USUniversity of California, San Francisco · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI David Darr · 1985 to 2026
$201.5M
UCSF CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024131 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSTON, S. CLAIBORNE · 2006 to 2011
$111.2M
Virology, Immunology, and Microbiology CoreP30AI050410 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2001 to 2026
$76.9M
STRUCTURAL NEUROIMAGING COREP30MH062512 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jessica Lynette Montoya · 2001 to 2026
$50.4M
Integrated Training in Cancer Model SystemsT32CA009156 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DER, CHANNING J. · 1985 to 2020
$19.7M
NEUROMOTORP01DA012065 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HEATON, ROBERT KERNACHAN · 1999 to 2009
$17.8M
SOURCES AND NEUROCOGNITIVE CORRELATES ON CSF HIV RNAR01MH058076 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLIS, RONALD J. · 1997 to 2010
$9.5M
Molecular Biology of Viral Diseases Predoctoral Training GrantT32AI007419 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Mark T Heise, CARY A MOODY · 1993 to 2026
$4.7M
Characterization of CNS-Compartmentalized env GenesR01MH067751 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SWANSTROM, RONALD I · 2003 to 2008
$2.3M
Treatment&Pathogenesis of Cerebrospinal Fluid HIV InfectR01NS037660 · NINDS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI PRICE, RICHARD W · 1998 to 2004
$1.7M
Neurocognitive Effects of HCV, HIV, and Drug UseR01DA016015 · NIDA · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI LETENDRE, SCOTT L · 2002 to 2004
$1.2M
NCI NIH HHS P30 CA016086NCI NIH HHS P30-CA16086NCI NIH HHS T32 CA009156NCI NIH HHS T32-CA09156NCRR NIH HHS UL1 RR024131NCRR NIH HHS UL1RR024131NIAID NIH HHS P30 AI050410NIAID NIH HHS P30-AI50410NIAID NIH HHS T32 AI007419NIDA NIH HHS P01 DA012065NIDA NIH HHS P01-DA12065NIDA NIH HHS R01 DA016015NIDA NIH HHS R01-DA16015NIMH NIH HHS P30 MH062512NIMH NIH HHS P30-MH62512NIMH NIH HHS R01 MH058076NIMH NIH HHS R01 MH067751NIMH NIH HHS R01-MH58076NIMH NIH HHS R01-MH67751NINDS NIH HHS R01 NS037660NINDS NIH HHS R01-NS37660
6 · The paper itself

Abstract

objectivesTo characterize HIV-1 env compartmentalization between cerebrospinal fluid (CSF) and peripheral blood plasma over all stages of the HIV-1 disease course, and to determine the relationship between the extent of CSF HIV-1 env compartmentalization and clinical neurologic disease status.

designPaired blood plasma and CSF specimens were collected from 66 HIV-infected patients cross-sectionally representing all major clinical stages relating to HIV-associated neurologic disease, including primary infection, asymptomatic chronic infection, chronic infection with minor global impairment, and immune deficiency with HIV-associated dementia.

methodsHeteroduplex tracking assays and bulk sequence analysis targeting the V1/V2, C2-V3, and V4/V5 regions of env were performed to characterize the genetic makeup of complex HIV-1 populations in the cross-sectional blood plasma and CSF specimens. The levels of blood plasma/CSF env compartmentalization were quantified and compared across the different clinical stages of HIV-1 neurologic disease.

resultsBlood plasma/CSF env compartmentalization levels varied considerably by disease stage and were generally consistent across all three regions of env characterized. Little or no compartmentalization was observed in non-impaired individuals with primary HIV-1 infection. Compartmentalization levels were elevated in chronically infected patients, but were not significantly different between mildly impaired and non-impaired patients. Patients with HIV-associated dementia showed significantly greater blood plasma/CSF env compartmentalization relative to other groups.

conclusion: Increased CSF compartmentalization of the HIV-1 env gene, which may reflect independent HIV-1 replication and evolution within the central nervous system, is specifically associated with HIV-associated dementia and not the less severe forms of HIV-1 neurologic disease.

Indexed as

Genes, envAIDS Dementia ComplexCaliforniaChronic DiseaseCross-Sectional StudiesDisease ProgressionHIV-1HIV InfectionsHumansNervous System DiseasesNorth CarolinaSan Francisco

Identifiers

PMID19414991
PMCPMC3089803
OpenAlexW1984034687

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.