Evidence map›Paper›PMID 19414790›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2009

Proximal glycans outside of the epitopes regulate the presentation of HIV-1 envelope gp120 helper epitopes.

Hualin Li, Chong-Feng Xu, Steven Blais, Qi Wan, Hui-Tang Zhang, Samuel J Landry, Catarina E Hioe

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Investigation of carbohydrate-based molecules ofFrontiers in veterinary science · 2026
    Article
  3. Review
  4. Review
  5. Article
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  7. Article
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  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Why Glycosylation Matters in Building a Better Flu Vaccine.Molecular & cellular proteomics : MCP · 2019
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Hualin LiDepartment of Veterans Affairs, New York Harbor Healthcare System, New York, NY, USA.
Chong-Feng Xu
Steven Blais
Qi Wan
Hui-Tang Zhang
Samuel J Landry
Catarina E Hioe
VA NY Harbor Healthcare System · USSidney Kimmel Cancer Center · USNew York University · USTulane University · US

Funding

VIROLOGY COREP30AI027742 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DUSTIN, MICHAEL LORAN · 1989 to 2010
$19.4M
Protein Mass Spectrometry Core Facility for NeuroscienceP30NS050276 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NEUBERT, THOMAS A · 2005 to 2015
$7.9M
TRAINING PROGRAM IN TB AND HIV PREVENTION AND TREATMENTD43TW001409 · FIC · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LAAL, SUMAN · 2000 to 2011
$4.6M
Why Th Cells from HIV+ Don't Respond to HIV AntigensR01AI048371 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI HIOE, CATARINA E · 2002 to 2010
$2.6M
HIV Env-Induced Synapse and SignalingR21AI071815 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI HIOE, CATARINA E · 2007 to 2009
$511k
MALDI-TOF MASS SPECTROMETERS10RR014662 · NCRR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NEUBERT, THOMAS A · 2000 to 2000
$264k
FIC NIH HHS D43 TW001409NCRR NIH HHS RR-14662NIAID NIH HHS AI-27742NIAID NIH HHS AI-48371NIAID NIH HHS P30 AI027742NIAID NIH HHS R01 AI048371NIAID NIH HHS R21 AI071815NINDS NIH HHS NS-050276NINDS NIH HHS P30 NS050276
6 · The paper itself

Abstract

Glycosylation of HIV-1 envelope gp120 determines not only the proper structure, but also the immune responses against this Ag. Although glycans may be part of specific epitopes or shield other epitopes from T cells and Abs, this study provides evidence for a different immunomodulatory function of glycans associated with gp120 residues N230 and N448. These glycans are required for efficient MHC class II-restricted presentation of nearby CD4 T cell epitopes, even though they are not part of the epitopes. The glycans do not affect CD4 T cell recognition of more distant epitopes and are not essential for the proper folding and function of gp120. Data on CD4 T cell recognition of N448 mutants combined with proteolysis analyses and surface electrostatic potential calculation around residue N448 support the notion that N448 glycan near the epitope's C terminus renders the site to be surface accessible and allows its efficient processing. In contrast, the N230 glycan contributes to the nearby epitope presentation at a step other than the proteolytic processing of the epitope. Hence, N-glycans can determine CD4 T cell recognition of nearby gp120 epitopes by regulating the different steps in the MHC class II processing and presentation pathway after APCs acquire the intact gp120 Ag exogenously. Modifications of amino acids bearing glycans at the C termini of gp120 helper epitopes may prove to be a useful strategy for enhancing the immunogenicity of HIV-1 envelope gp120.

Indexed as

Amino Acid SequenceAntigen PresentationCD4-Positive T-LymphocytesCell LineEpitopes, T-LymphocyteHistocompatibility Antigens Class IIHIV Envelope Protein gp120HumansMolecular Sequence DataMutagenesis, Site-DirectedPolysaccharidesProtein Structure, SecondaryProtein Structure, TertiarySpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationEpitopes, T-LymphocyteHistocompatibility Antigens Class IIHIV Envelope Protein gp120Polysaccharides

Identifiers

PMID19414790
PMCPMC2808118
OpenAlexW1765247660

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.