Evidence map›Paper›PMID 19413987›Full record

ArticleBiophysical journal2009

Mechanical characterization of protein L in the low-force regime by electromagnetic tweezers/evanescent nanometry.

Ruchuan Liu, Sergi Garcia-Manyes, Atom Sarkar, Carmen L Badilla, Julio M Fernández

Abstract read
In one paragraph

Article in Biophysical journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Review
  2. Review
  3. Force-regulated chaperone activity of BiP/ERdj3 is opposite to their homologs DnaK/DnaJ.Protein science : a publication of the Protein Society · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Multidomain proteins under force.Nanotechnology · 2017
    Article
  9. A HaloTag Anchored Ruler for Week-Long Studies of Protein Dynamics.Journal of the American Chemical Society · 2016
    Article
  10. Article
  11. Article
  12. Interrogating the activities of conformational deformed enzyme by single-molecule fluorescence-magnetic tweezers microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  13. Article
  14. The elastic free energy of a tandem modular protein under force.Biochemical and biophysical research communications · 2015
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Single molecule recordings of lysozyme activity.Physical chemistry chemical physics : PCCP · 2013
    Article
  20. Nanomechanics of HaloTag tethers.Journal of the American Chemical Society · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ruchuan LiuDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA. phylr@nus.edu.sg
Sergi Garcia-Manyes
Atom Sarkar
Carmen L Badilla
Julio M Fernández

Funding

Single Molecule Studies of Titin ElasticityR01HL061228 · NHLBI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI FERNANDEZ, JULIO M · 1999 to 2017
$7.4M
Nanomechanics of the extracellular matrixR01HL066030 · NHLBI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI FERNANDEZ, JULIO M · 2001 to 2013
$5.0M
NHLBI NIH HHS HL61228NHLBI NIH HHS HL66030NHLBI NIH HHS R01 HL061228NHLBI NIH HHS R01 HL066030
6 · The paper itself

Abstract

Mechanical manipulation at the single molecule level of proteins exhibiting mechanical stability poses a technical challenge that has been almost exclusively approached by atomic force microscopy (AFM) techniques. However, due to mechanical drift limitations, AFM techniques are restricted to experimental recordings that last less than a minute in the high-force regime. Here we demonstrate a novel combination of electromagnetic tweezers and evanescent nanometry that readily captures the forced unfolding trajectories of protein L at pulling forces as low as 10-15 pN. Using this approach, we monitor unfolding and refolding cycles of the same polyprotein for a period of time longer than 30 min. From such long-lasting recordings, we obtain ensemble averages of unfolding step sizes and rates that are consistent with single-molecule AFM data obtained at higher stretching forces. The unfolding kinetics of protein L at low stretching forces confirms and extends the observations that the mechanical unfolding rate is exponentially dependent on the pulling force within a wide range of stretching forces spanning from 13 pN up to 120 pN. Our experiments demonstrate a novel approach for the mechanical manipulation of single proteins for extended periods of time in the low-force regime.

Indexed as

Protein FoldingBacterial ProteinsCalibrationKineticsMicroscopy, Atomic ForceMicroscopy, FluorescenceSpectrum AnalysisBacterial ProteinsIg L-binding protein, Peptostreptococcus

Identifiers

PMID19413987
PMCPMC2711406

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.