Evidence map›Paper›PMID 19412185›Full record

ArticleNature biotechnology2009

Allele-specific silencing of mutant huntingtin and ataxin-3 genes by targeting expanded CAG repeats in mRNAs.

Jiaxin Hu, Masayuki Matsui, Keith T Gagnon, Jacob C Schwartz, Sylvie Gabillet, Khalil Arar, Jun Wu, Ilya Bezprozvanny, David R Corey

Open access · greenAbstract read
In one paragraph

Article in Nature biotechnology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 146 papers.

0numbers the graph read from it
0cells of the map it votes in
146citing papers in PubMed
8.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

146 citing papers in PubMed, 239 citations in OpenAlex.

  1. Article
  2. Gamma-FIT-PNAs as sensitive RNA probes.RSC chemical biology · 2026
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86 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Jiaxin HuDepartment of Pharmacology, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas, USA.
Masayuki Matsui
Keith T Gagnon
Jacob C Schwartz
Sylvie Gabillet
Khalil Arar
Jun Wu
Ilya Bezprozvanny
David R Corey
The University of Texas Southwestern Medical Center · USGenopole (France) · FR

Funding

Deranged calcium signaling and polyglutamine expansion disordersR01NS056224 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI BEZPROZVANNY, ILYA B · 2008 to 2020
$3.5M
Recognition of Chromosomal DNA by Peptide Nucleic AcidsR01GM073042 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI COREY, DAVID R · 2005 to 2016
$3.5M
CONTROLLING GENE EXPRESSION WITH PEPTIDE NUCLEIC ACIDSR01GM060642 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI COREY, DAVID R. · 2000 to 2007
$2.2M
"Smart" Radiolabels to Image Macromolecular InteractionsF31EB005556 · NIBIB · UT SOUTHWESTERN MEDICAL CENTER · PI SCHWARTZ, JACOB C. · 2006 to 2009
$117k
NIBIB NIH HHS EB 05556NIGMS NIH HHS R01 GM060642NIGMS NIH HHS R01 GM073042NINDS NIH HHS R01 NS056224NINDS NIH HHS R01NS056224PHS HHS NIGMS 60642PHS HHS NIGMS 73042
6 · The paper itself

Abstract

Expanded trinucleotide repeats cause many neurological diseases. These include Machado-Joseph disease (MJD) and Huntington's disease (HD), which are caused by expanded CAG repeats within an allele of the ataxin-3 (ATXN3) and huntingtin (HTT) genes, respectively. Silencing expression of these genes is a promising therapeutic strategy, but indiscriminate inhibition of both the mutant and wild-type alleles may lead to toxicity, and allele-specific approaches have required polymorphisms that differ among individuals. We report that peptide nucleic acid and locked nucleic acid antisense oligomers that target CAG repeats can preferentially inhibit mutant ataxin-3 and HTT protein expression in cultured cells. Duplex RNAs were less selective than single-stranded oligomers. The activity of the peptide nucleic acids does not involve inhibition of transcription, and differences in mRNA secondary structure or the number of oligomer binding sites may be important. Antisense oligomers that discriminate between wild-type and mutant genes on the basis of repeat length may offer new options for developing treatments for MJD, HD and related hereditary diseases.

Indexed as

Trinucleotide Repeat ExpansionAnimalsAtaxin-3Cell LineCells, CulturedFemaleFibroblastsHumansHuntingtin ProteinHuntington DiseaseMachado-Joseph DiseaseMaleMiceNerve Tissue ProteinsNuclear ProteinsOligonucleotides, AntisenseAtaxin-3ATXN3 protein, humanHTT protein, humanHuntingtin ProteinNerve Tissue ProteinsNuclear ProteinsOligonucleotides, AntisensePeptide Nucleic AcidsRepressor Proteins

Identifiers

PMID19412185
PMCPMC2765218
OpenAlexW2007578481

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.