Evidence map›Paper›PMID 19412176›Full record

ArticleNature genetics2009

Narcolepsy is strongly associated with the T-cell receptor alpha locus.

Joachim Hallmayer, Juliette Faraco, Ling Lin, Stephanie Hesselson, Juliane Winkelmann, Minae Kawashima, Geert Mayer, Giuseppe Plazzi, Sona Nevsimalova, Patrice Bourgin and 39 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 194 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
194citing papers in PubMed, 2 pooled it
20.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

194 citing papers in PubMed, 2 syntheses or guidelines pooled it, 480 citations in OpenAlex.

  1. Abundant pleiotropy in human complex diseases and traits.American journal of human genetics · 2011
    Pooled it
  2. Pooled it
  3. Trial
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  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. The immunopathogenesis of narcolepsy type 1.Nature reviews. Immunology · 2024
    Review
  15. Article
  16. A series of 7 cases of patients with narcolepsy with hypocretin deficiency without the HLA DQB1*06:02 allele.Journal of clinical sleep medicine : JCSM : official publication of the American Academy of Sleep Medicine · 2023
    Article
  17. Review
  18. Article
  19. Article
  20. Epigenetic silencing of selected hypothalamic neuropeptides in narcolepsy with cataplexy.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article

134 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

49 authors at 20 institutions in 9 countries.

Joachim HallmayerCenter for Sleep Sciences, Stanford University School of Medicine, Palo Alto, California, USA.
Juliette Faraco
Ling Lin
Stephanie Hesselson
Juliane Winkelmann
Minae Kawashima
Geert Mayer
Giuseppe Plazzi
Sona Nevsimalova
Patrice Bourgin
Seung-Chul Hong
Sheng Seung-Chul Hong
Yutaka Honda
Makoto Honda
Birgit Högl
William T Longstreth
Jacques Montplaisir
David Kemlink
Mali Einen
Justin Chen
Stacy L Musone
Matthew Akana
Taku Miyagawa
Jubao Duan
Alex Desautels
Christine Erhardt
Per Egil Hesla
Francesca Poli
Birgit Frauscher
Jong-Hyun Jeong
Sung-Pil Lee
Thanh G N Ton
Mark Kvale
Libor Kolesar
Marie Dobrovolná
Gerald T Nepom
Dan Salomon
H-Erich Wichmann
Guy A Rouleau
Christian Gieger
Douglas F Levinson
Pablo V Gejman
Thomas Meitinger
Terry Young
Paul Peppard
Katsushi Tokunaga
Pui-Yan Kwok
Neil Risch
Emmanuel Mignot
University of California, San Francisco · USStanford University · USSt. Vincent's Hospital · KRThe University of Tokyo · JPUniversité de Montréal · CACharles University · CZHelmholtz Zentrum München · DEHôpital Civil, Strasbourg · FRInnsbruck Medical University · ATTokyo Institute of Psychiatry · JPUniversity of Bologna · ITUniversity of Washington · USUniversity of Wisconsin–Madison · USInstitute of Clinical and Experimental Medicine · CZInstitute of Haematology and Blood Transfusion · CZLudwig-Maximilians-Universität München · DENorthShore University HealthSystem · USNorthwestern University · USPhilipps University of Marburg · DEScripps Research Institute · US

Funding

Quantitative Biology CoreU19AI063603 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI YATES III, JOHN R · 2004 to 2015
$26.4M
SPECTRUM OF NARCOLEPSY AND ITS SYMPTOMSP50NS023724 · NINDS · STANFORD UNIVERSITY · PI MIGNOT, EMMANUEL J · 1986 to 2016
$18.9M
EPIDEMIOLOGY OF SLEEP-DISORDERED BREATHING IN ADULTSR01HL062252 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI PEPPARD, PAUL E · 1999 to 2013
$14.1M
A Genome-Wide Association Study of SchizophreniaU01MH079469 · NIMH · NORTHSHORE UNIVERSITY HEALTHSYSTEM · PI GEJMAN, PABLO V. · 2007 to 2009
$4.4M
MOLECULAR GENETICS OF HUMAN NARCOLEPSYR37NS033797 · NINDS · STANFORD UNIVERSITY · PI MIGNOT, EMMANUEL J · 1999 to 2005
$2.7M
Molecular Genetics of Kleine-Levin SyndromeR01MH080957 · NIMH · STANFORD UNIVERSITY · PI MIGNOT, EMMANUEL J · 2007 to 2011
$2.1M
EPIDEMIOLOGY OF NARCOLEPSYR01NS038523 · NINDS · UNIVERSITY OF WASHINGTON · PI LONGSTRETH, WT · 2001 to 2004
$2.1M
Genome-wide Association Study of SchizophreniaU01MH079470 · NIMH · STANFORD UNIVERSITY · PI LEVINSON, DOUGLAS FREDERICK · 2007 to 2009
$1.1M
CIHR MGC 77493Howard Hughes Medical InstituteNHLBI NIH HHS R01 HL062252NHLBI NIH HHS R01 HL62252NIAID NIH HHS 5U19 AI063603NIAID NIH HHS U19 AI063603NIMH NIH HHS 5U01 MH079469-02NIMH NIH HHS 5U01 MH079470NIMH NIH HHS R01 MH080957NIMH NIH HHS U01 MH079469NIMH NIH HHS U01 MH079470NINDS NIH HHS L30 NS052978NINDS NIH HHS P50 NS023724NINDS NIH HHS P50 NS2372NINDS NIH HHS R01 NS038523NINDS NIH HHS R01 NS38523NINDS NIH HHS R37 NS033797
6 · The paper itself

Abstract

Narcolepsy with cataplexy, characterized by sleepiness and rapid onset into REM sleep, affects 1 in 2,000 individuals. Narcolepsy was first shown to be tightly associated with HLA-DR2 (ref. 3) and later sublocalized to DQB1*0602 (ref. 4). Following studies in dogs and mice, a 95% loss of hypocretin-producing cells in postmortem hypothalami from narcoleptic individuals was reported. Using genome-wide association (GWA) in Caucasians with replication in three ethnic groups, we found association between narcolepsy and polymorphisms in the TRA@ (T-cell receptor alpha) locus, with highest significance at rs1154155 (average allelic odds ratio 1.69, genotypic odds ratios 1.94 and 2.55, P < 10(-21), 1,830 cases, 2,164 controls). This is the first documented genetic involvement of the TRA@ locus, encoding the major receptor for HLA-peptide presentation, in any disease. It is still unclear how specific HLA alleles confer susceptibility to over 100 HLA-associated disorders; thus, narcolepsy will provide new insights on how HLA-TCR interactions contribute to organ-specific autoimmune targeting and may serve as a model for over 100 other HLA-associated disorders.

Indexed as

AnimalsChromosomes, Human, Pair 14Chromosomes, Human, Pair 22DNA ReplicationDogsGenotypeHumansHypothalamusMiceNarcolepsyPolymorphism, Single NucleotideReceptors, Antigen, T-Cell, alpha-betaReceptors, Antigen, T-Cell, alpha-beta

Identifiers

PMID19412176
PMCPMC2803042
OpenAlexW2053002029

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.