Evidence map›Paper›PMID 19411704›Full record

ArticleThe Journal of biological chemistry2009

Proliferating cell nuclear antigen uses two distinct modes to move along DNA.

Anna B Kochaniak, Satoshi Habuchi, Joseph J Loparo, Debbie J Chang, Karlene A Cimprich, Johannes C Walter, Antoine M van Oijen

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed.

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32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Anna B KochaniakGraduate Program in Biophysics, Harvard University, Cambridge, Massachusetts 02138, USA.
Satoshi Habuchi
Joseph J Loparo
Debbie J Chang
Karlene A Cimprich
Johannes C Walter
Antoine M van Oijen

Funding

Regulation of the DNA Damage ResponseR01ES016486 · NIEHS · STANFORD UNIVERSITY · PI CIMPRICH, KARLENE A · 2007 to 2025
$6.2M
Properties of the eukaryotic replicative DNA helicaseR01GM062267 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALTER, JOHANNES · 2001 to 2014
$4.1M
Single-molecule enzymology of the replisomeR01GM077248 · NIGMS · HARVARD MEDICAL SCHOOL · PI VAN OIJEN, ANTOINE M · 2007 to 2011
$1.2M
Regulation of the DNA damage ResponseR56ES016486 · NIEHS · STANFORD UNIVERSITY · PI CIMPRICH, KARLENE A · 2024 to 2024
$500k
NIEHS NIH HHS ES016486NIEHS NIH HHS R01 ES016486NIEHS NIH HHS R56 ES016486NIGMS NIH HHS GM62267NIGMS NIH HHS R01 GM062267NIGMS NIH HHS R01 GM077248
6 · The paper itself

Abstract

Proliferating cell nuclear antigen (PCNA) plays an important role in eukaryotic genomic maintenance by topologically binding DNA and recruiting replication and repair proteins. The ring-shaped protein forms a closed circle around double-stranded DNA and is able to move along the DNA in a random walk. The molecular nature of this diffusion process is poorly understood. We use single-molecule imaging to visualize the movement of individual, fluorescently labeled PCNA molecules along stretched DNA. Measurements of diffusional properties as a function of viscosity and protein size suggest that PCNA moves along DNA using two different sliding modes. Most of the time, the clamp moves while rotationally tracking the helical pitch of the DNA duplex. In a less frequently used second mode of diffusion, the movement of the protein is uncoupled from the helical pitch, and the clamp diffuses at much higher rates.

Indexed as

AnimalsDNADNA-Directed DNA PolymeraseDNA ReplicationProliferating Cell Nuclear AntigenQuantum DotsXenopus laevisDNADNA-Directed DNA PolymeraseProliferating Cell Nuclear Antigen

Identifiers

PMID19411704
PMCPMC2719409

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.