Evidence map›Paper›PMID 19411412›Full record

ArticleApplied and environmental microbiology2009

New insights into {gamma}-aminobutyric acid catabolism: Evidence for {gamma}-hydroxybutyric acid and polyhydroxybutyrate synthesis in Saccharomyces cerevisiae.

Benoît Bach, Emmanuelle Meudec, Jean-Paul Lepoutre, Tristan Rossignol, Bruno Blondin, Sylvie Dequin, Carole Camarasa

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 80 citations in OpenAlex.

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  11. Regulation of Amino Acid Transport in Saccharomyces cerevisiae.Microbiology and molecular biology reviews : MMBR · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Benoît BachUMR Sciences pour l'Oenologie, INRA, Montpellier, France.
Emmanuelle Meudec
Jean-Paul Lepoutre
Tristan Rossignol
Bruno Blondin
Sylvie Dequin
Carole Camarasa
Sciences pour L’Œnologie · FRInstitut Agro Montpellier · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The gamma-aminobutyrate (GABA) shunt, an alternative route for the conversion of alpha-ketoglutarate to succinate, involves the glutamate decarboxylase Gad1p, the GABA transaminase Uga1p and the succinate semialdehyde dehydrogenase Uga2p. This pathway has been extensively described in plants and animals, but its function in yeast remains unclear. We show that the flux through Gad1p is insignificant during fermentation in rich sugar-containing medium, excluding a role for this pathway in redox homeostasis under anaerobic conditions or sugar stress. However, we found that up to 4 g of exogenous GABA/liter was efficiently consumed by yeast. We studied the fate of this consumed GABA. Most was converted into succinate, with a reaction yield of 0.7 mol/mol. We also showed that a large proportion of GABA was stored within cells, indicating a possible role for this molecule in stress tolerance mechanisms or nitrogen storage. Furthermore, based on enzymatic and metabolic evidence, we identified an alternative route for GABA catabolism, involving the reduction of succinate-semialdehyde into gamma-hydroxybutyric acid and the polymerization of gamma-hydroxybutyric acid to form poly-(3-hydroxybutyric acid-co-4-hydroxybutyric acid). This study provides the first demonstration of a native route for the formation of this polymer in yeast. Our findings shed new light on the GABA pathway and open up new opportunities for industrial applications.

Indexed as

4-Aminobutyrate TransaminaseFermentationgamma-Aminobutyric AcidGlutamate DecarboxylaseHydroxybutyratesKetoglutaric AcidsMetabolic Networks and PathwaysModels, BiologicalPolyestersPolyhydroxybutyratesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSuccinate-Semialdehyde Dehydrogenase (NADP+)Succinic Acid4-Aminobutyrate Transaminase4-hydroxybutyric acidgamma-Aminobutyric AcidGlutamate Decarboxylaseglutamate decarboxylase 1HydroxybutyratesKetoglutaric Acidspoly(4-hydroxybutanoate)poly-beta-hydroxybutyratePolyestersPolyhydroxybutyratesSaccharomyces cerevisiae ProteinsSuccinate-Semialdehyde Dehydrogenase (NADP+)Succinic AcidUGA2 protein, S cerevisiae

Identifiers

PMID19411412
PMCPMC2704823
OpenAlexW2109483151

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.