Evidence map›Paper›PMID 19411257›Full record

ArticleThe Journal of biological chemistry2009

A new sialidase mechanism: bacteriophage K1F endo-sialidase is an inverting glycosidase.

Thomas J Morley, Lisa M Willis, Chris Whitfield, Warren W Wakarchuk, Stephen G Withers

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
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  4. Article
  5. Article
  6. Article
  7. Sialidase Inhibitors with Different Mechanisms.Journal of medicinal chemistry · 2022
    Review
  8. Article
  9. RSC chemical biology · 2022
    Review
  10. Article
  11. Article
  12. Review
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Thomas J MorleyDepartment of Chemistry, University of British Columbia, Vancouver, British Columbia V6T 1Z1.
Lisa M Willis
Chris Whitfield
Warren W Wakarchuk
Stephen G Withers
University of British Columbia · CAUniversity of Guelph · CANational Academies of Sciences, Engineering, and Medicine · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteriophages specific for Escherichia coli K1 express a tailspike protein that degrades the polysialic acid coat of E. coli K1 that is essential for bacteriophage infection. This enzyme is specific for polysialic acid and is a member of a family of endo-sialidases. This family is unusual because all other previously reported sialidases outside of this family are exo- or trans-sialidases. The recently determined structure of an endo-sialidase derived from bacteriophage K1F (endoNF) revealed an active site that lacks a number of the residues that are conserved in other sialidases, implying a new, endo-sialidase-specific catalytic mechanism. Using synthetic trifluoromethylumbelliferyl oligosialoside substrates, kinetic parameters for hydrolysis at a single cleavage site were determined. Measurement of kcat/Km at a series of pH values revealed a dependence on a single protonated group of pKa 5. Mutation of a putative active site acidic residue, E581A, resulted in complete loss of sialidase activity. Direct 1H NMR analysis of the hydrolysis of trifluoromethylumbelliferyl sialotrioside revealed that endoNF is an inverting sialidase. All other wild type sialidases previously reported are retaining glycosidases, implying a new mechanism of sialidase action specific to this family of endo-sialidases.

Indexed as

AnimalsBacteriophagesBinding SitesCampylobacter jejuniChromatography, Thin LayerGlycoproteinsGlycoside HydrolasesGlycosidesHydrolysisMagnetic Resonance SpectroscopyMutagenesis, Site-DirectedMutationNeuraminidaseSialyltransferasesSubstrate SpecificityTrypanosoma cruziendo-N-acetylneuraminidaseGlycoproteinsGlycoside HydrolasesGlycosidesNeuraminidaseSialyltransferasestrans-sialidase

Identifiers

PMID19411257
PMCPMC2719380
OpenAlexW2090989739

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.