Evidence map›Paper›PMID 19408025›Full record

ArticleJournal of industrial microbiology & biotechnology2009

Functional expression of SCO7832 stimulates tautomycetin production via pathway-specific regulatory gene overexpression in Streptomyces sp. CK4412.

Shin-Hae Park, Si-Sun Choi, Yoon Jung Kim, Yong Keun Chang, David H Sherman, Eung-Soo Kim

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In one paragraph

Article in Journal of industrial microbiology & biotechnology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Shin-Hae ParkDepartment of Biological Engineering, Inha University, Incheon 402-751, Korea.
Si-Sun Choi
Yoon Jung Kim
Yong Keun Chang
David H Sherman
Eung-Soo Kim
Inha University · KRKorea Advanced Institute of Science and Technology · KRUniversity of Michigan–Ann Arbor · US

Funding

Molecular Analysis of Modular Polyketide SynthasesR01GM076477 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHERMAN, DAVID H, SMITH, JANET L. · 2006 to 2018
$5.2M
NIGMS NIH HHS GM076477
6 · The paper itself

Abstract

Comparative transcriptome analysis has revealed several acidic pH shock-induced genes presumably involved with stimulation of antibiotic production by S. coelicolor (Kim et al. Appl Microbiol Biotechnol 2007). Streptomyces sp. CK4412 produces a novel T cell-specific immunosuppressive compound, tautomycetin (TMC). When cultured at acidic pH medium, it also exhibited higher TMC productivity. To verify a gene responsible for acidic pH shock-induced TMC stimulation, a putative acid-shock-induced gene, SCO7832 encoding an Na(+)/H(+) antiporter protein, was cloned under the influence of a strong constitutive ermE* promoter in an integrative expression pSET152 vector. This was followed by its conjugation into the TMC-producing Streptomyces sp. CK4412. Comparing TMC production and antifungal activity of wild-type and the SCO7832-containing exconjugant revealed that SCO7832 stimulated TMC production more than 3.5-fold in Streptomyces sp. CK4412. The over-expression of SCO7832 did not affect the ratio between intra- and extra-cellular TMC productions. However, it significantly stimulated the expression of a TMC-specific positive regulatory gene. This implies that the stimulatory effect of SCO7832 functions in TMC-producing Streptomyces sp. CK4412 via up-regulation of a TMC pathway-specific positive regulatory gene, tmcN overexpression.

Indexed as

Gene ExpressionAcidsAnti-Bacterial AgentsBiosynthetic PathwaysFuransGene Expression ProfilingGene Expression Regulation, BacterialGenes, BacterialGenetic EngineeringLipidsRecombination, GeneticStreptomyces coelicolorStress, PhysiologicalAcidsAnti-Bacterial AgentsFuransLipidstautomycetin

Identifiers

PMID19408025
OpenAlexW2000746776

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.