Evidence map›Paper›PMID 19404961›Full record

ArticleArthritis and rheumatism2009

Gene expression profiling in neutrophils from children with polyarticular juvenile idiopathic arthritis.

James N Jarvis, Kaiyu Jiang, Mark Barton Frank, Nicholas Knowlton, Amita Aggarwal, Carol A Wallace, Ryan McKee, Brad Chaser, Catherine Tung, Laura B Smith and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Arthritis and rheumatism, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 58 citations in OpenAlex.

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  13. Immunomics in Pediatric Rheumatic Diseases.Frontiers in medicine · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

James N JarvisPediatric Rheumatology Research, College of Medicine, Children's Hospital of Oklahoma, University of Oklahoma, Oklahoma City, OK 73013, USA. james-jarvis@ouhsc.edu
Kaiyu Jiang
Mark Barton Frank
Nicholas Knowlton
Amita Aggarwal
Carol A Wallace
Ryan McKee
Brad Chaser
Catherine Tung
Laura B Smith
Julie L McGhee
Yanmin Chen
Jeanette Osban
Kathleen M O'Neil
Michael Centola
University of Oklahoma · USOklahoma Medical Research Foundation · USOklahoma City University · USChildren's Hospital of Oklahoma · USSanjay Gandhi Post Graduate Institute of Medical Sciences · INSeattle Children's Hospital · USSt. Louis Children's Hospital · US

Funding

Translation of immunologic technologies from basic research into pre-clinical nonU19AI062629 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI THOMPSON, LINDA F · 2004 to 2023
$56.2M
VACCINE-TARGETED IDENTIFICATION OF FITNESS DETERMINANTS IN THE HIV-1 ENVELOPEP20RR016478 · NCRR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI LEWIS, SHARON A · 2001 to 2011
$35.8M
THE EFFECTS OF ERK PATHWAY INHIBITION ON DNA METHYLATION IN SLEP20RR015577 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI CENTOLA, MICHAEL B · 2000 to 2009
$21.5M
VALIDATING NOVEL GENES IMPLICATED IN LEUKOCYTE CHEMOTAXISP20RR020143 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GAFFNEY, PATRICK M · 2004 to 2011
$21.0M
Trt. of Primary Hyperaldosteronism w/ACE Inhibitors &Angiotension Rec. BlockersM01RR014467 · NCRR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI TUCKER, PHEBE M · 2001 to 2007
$10.4M
SNP Confirmation and High Throughput Genotyping CoreP30AR053483 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GUTHRIDGE, JOEL MARVIN · 2007 to 2017
$6.7M
Leukocyte Microarrays in Juvenile Rheumatoid ArthritisR21AR048378 · NIAMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI JARVIS, JAMES N · 2002 to 2003
$225k
NCRR NIH HHS M01 RR014467NCRR NIH HHS P20 RR015577NCRR NIH HHS P20 RR016478NCRR NIH HHS P20 RR020143NCRR NIH HHS RR-020143NCRR NIH HHS RR-03145NCRR NIH HHS RR-15577NCRR NIH HHS RR-16478NHLBI NIH HHS HR-07-139NIAID NIH HHS AI-062629NIAID NIH HHS U19 AI062629NIAMS NIH HHS AR-061-015NIAMS NIH HHS AR-081-006NIAMS NIH HHS P30 AR053483
6 · The paper itself

Abstract

objectiveWe have previously reported a defect in neutrophil activation in children with polyarticular juvenile idiopathic arthritis (JIA). The current study was undertaken to determine whether gene expression abnormalities persist in JIA in remission and to use systems biology analysis to elucidate pathologic pathways in polyarticular JIA.

methodsWe performed gene expression profiling on neutrophils from children with polyarticular JIA. Children were grouped according to disease status. We studied 14 children with active disease who were taking medication, 8 children with clinical remission of disease who were taking medication (CRM status), and 6 children with clinical remission of disease who were not taking medication (CR status). We also studied 13 healthy children whose age ranges overlapped those of the patients.

resultsNeutrophil abnormalities persisted in children with polyarticular JIA even after disease remission was achieved. Children with active disease and those with CRM status showed no differences in expression of specific genes, although they could be separated on cluster analysis. A comparison of children with CR status and healthy control children revealed networks of pro- and antiinflammatory genes that suggested that remission is a state of homeostasis and balance rather than a return to normal immune function. Furthermore, gene overexpression in patients with CR status supports the hypothesis that neutrophils play a role in regulating adaptive immunity in this disease.

conclusionNeutrophil gene profiling in polyarticular JIA suggests important roles for neutrophils in disease pathogenesis. These findings suggest the presence of complex interactions between innate and adaptive immunity, that are not easily modeled in conventional, linear, reductionist systems.

Indexed as

Gene Expression ProfilingAdolescentArthritis, JuvenileChildChild, PreschoolCluster AnalysisHumansNeutrophilsReverse Transcriptase Polymerase Chain Reaction

Identifiers

PMID19404961
PMCPMC3063001
OpenAlexW2089442993

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.