Evidence map›Paper›PMID 19400712›Full record

ReviewAnnual review of biomedical engineering2009

Fluorescent probes for live-cell RNA detection.

Gang Bao, Won Jong Rhee, Andrew Tsourkas

Abstract readReview
In one paragraph

Review in Annual review of biomedical engineering, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Nucleic-Acid Structures as Intracellular Probes for Live Cells.Advanced materials (Deerfield Beach, Fla.) · 2020
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Gang BaoDepartment of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia 30332, USA. gang.bao@bme.gatech.edu
Won Jong Rhee
Andrew Tsourkas

Funding

Tissue and Animal UseU54CA119338 · NCI · EMORY UNIVERSITY · PI WANG, ZHONG · 2005 to 2009
$18.4M
Nanotechnology: Detection &Analysis of Plaque FormationU01HL080711 · NHLBI · EMORY UNIVERSITY · PI BAO, GANG · 2005 to 2009
$11.0M
Novel Probe for Quantitative Imaging of Gene ExpressionR21CA116102 · NCI · UNIVERSITY OF PENNSYLVANIA · PI TSOURKAS, ANDREW · 2006 to 2007
$363k
Optical probe for the flow cytometric screening of microRNAR21CA125088 · NCI · UNIVERSITY OF PENNSYLVANIA · PI TSOURKAS, ANDREW · 2007 to 2008
$314k
NCI NIH HHS CA116102NCI NIH HHS CA119338NCI NIH HHS CA125088NCI NIH HHS R21 CA116102NCI NIH HHS R21 CA125088NCI NIH HHS U54 CA119338NHLBI NIH HHS HL80711NHLBI NIH HHS U01 HL080711
6 · The paper itself

Abstract

Commonly used techniques for analyzing gene expression, such as polymerase chain reaction (PCR), microarrays, and in situ hybridization, have proven invaluable in understanding RNA processing and regulation. However, these techniques rely on the use of lysed and/or fixed cells and are therefore limited in their ability to provide important spatial-temporal information. This has led to the development of numerous techniques for imaging RNA in living cells, some of which have already provided important insight into the dynamic role RNA plays in dictating cell behavior. Here we review the fluorescent probes that have allowed for RNA imaging in living cells and discuss their utility and limitations. Common challenges faced by fluorescent probes, such as probe design, delivery, and target accessibility, are also discussed. It is expected that continued advancements in live cell imaging of RNA will open new and exciting opportunities in a wide range of biological and medical applications.

Indexed as

3' Untranslated RegionsCell MembraneElectroporationFluorescence Resonance Energy TransferFluorescent DyesGene Expression ProfilingGreen Fluorescent ProteinsHumansIn Situ HybridizationMicroscopy, FluorescenceModels, GeneticOligonucleotide Array Sequence AnalysisPolymerase Chain ReactionRNARNA, Messenger3' Untranslated RegionsFluorescent DyesGreen Fluorescent ProteinsRNARNA, Messenger

Identifiers

PMID19400712
PMCPMC2734976

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.