ArticleMethods in molecular biology (Clifton, N.J.)2009
Multicell simulations of development and disease using the CompuCell3D simulation environment.
Article in Methods in molecular biology (Clifton, N.J.), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
25 citing papers in PubMed.
- Multimodal data integration to determine viral and innate immune kinetics in human airway epithelium.PLoS computational biology · 2026Article
- An in silico modeling approach to understanding the dynamics of the post-burn immune response.Frontiers in immunology · 2024Article
- Modelling of Tissue Invasion in Epithelial Monolayers.Life (Basel, Switzerland) · 2023Article
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- Modelling the Collective Mechanical Regulation of the Structure and Morphology of Epithelial Cell Layers.Frontiers in cell and developmental biology · 2022Article
- Comparative analysis of continuum angiogenesis models.Journal of mathematical biology · 2021Article
- Software for Bioprinting.International journal of bioprinting · 2020Review
- Modelling drug transport during intraperitoneal chemotherapy.Pleura and peritoneum · 2017Review
- Virtual-tissue computer simulations define the roles of cell adhesion and proliferation in the onset of kidney cystic disease.Molecular biology of the cell · 2016Article
- IL-2 sensitivity and exogenous IL-2 concentration gradient tune the productive contact duration of CD8(+) T cell-APC: a multiscale modeling study.BMC systems biology · 2016Article
- Lattice-based model of ductal carcinoma in situ suggests rules for breast cancer progression to an invasive state.PLoS computational biology · 2014Article
- The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents.Bioinformatics (Oxford, England) · 2014Article
- A computational model predicting disruption of blood vessel development.PLoS computational biology · 2013Article
- Acute and fractionated irradiation differentially modulate glioma stem cell division kinetics.Cancer research · 2013Article
- Ovarian tumor attachment, invasion, and vascularization reflect unique microenvironments in the peritoneum: insights from xenograft and mathematical models.Frontiers in oncology · 2013Article
- The importance of geometry in mathematical models of developing systems.Current opinion in genetics & development · 2012Review
- Adhesion failures determine the pattern of choroidal neovascularization in the eye: a computer simulation study.PLoS computational biology · 2012Article
- Article
- Modeling cellular processes in 3D.Trends in cell biology · 2011Review
- Toward a comprehensive language for biological systems.BMC biology · 2011Review
Corrections and comments
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Authors and funding
6 authors.
Funding
Abstract
Mathematical modeling and computer simulation have become crucial to biological fields from genomics to ecology. However, multicell, tissue-level simulations of development and disease have lagged behind other areas because they are mathematically more complex and lack easy-to-use software tools that allow building and running in silico experiments without requiring in-depth knowledge of programming. This tutorial introduces Glazier-Graner-Hogeweg (GGH) multicell simulations and CompuCell3D, a simulation framework that allows users to build, test, and run GGH simulations.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.