Evidence map›Paper›PMID 19398776›Full record

ArticleThe Journal of general physiology2009

Ionic selectivity in L-type calcium channels by electrostatics and hard-core repulsion.

Dezso Boda, Mónika Valiskó, Douglas Henderson, Bob Eisenberg, Dirk Gillespie, Wolfgang Nonner

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of general physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 103 citations in OpenAlex.

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  5. Setting Boundaries for Statistical Mechanics.Molecules (Basel, Switzerland) · 2022
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  9. 1,8-Cineole blocks voltage-gated L-type calcium channels in tracheal smooth muscle.Pflugers Archiv : European journal of physiology · 2018
    Article
  10. Article
  11. Ion conduction and conformational flexibility of a bacterial voltage-gated sodium channel.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  12. Review
  13. Article
  14. Article
  15. Ionizable side chains at catalytic active sites of enzymes.European biophysics journal : EBJ · 2012
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Dezso BodaDepartment of Physical Chemistry, University of Pannonia, H-8201 Veszprém, Hungary.
Mónika Valiskó
Douglas Henderson
Bob Eisenberg
Dirk Gillespie
Wolfgang Nonner
Rush University Medical Center · USUniversity of Pannonia · HUBrigham Young University · USUniversity of Miami · US

Funding

Mathematics of Ions in Protein ChannelsR01GM067241 · NIGMS · RUSH UNIVERSITY MEDICAL CENTER · PI EISENBERG, ROBERT S. · 2002 to 2005
$1.4M
Mechanisms of ion channel conduction and blockR01GM083161 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI NONNER, WOLFGANG F · 2008 to 2011
$905k
NIGMS NIH HHS GM067241NIGMS NIH HHS GM083161NIGMS NIH HHS R01 GM067241NIGMS NIH HHS R01 GM083161
6 · The paper itself

Abstract

A physical model of selective "ion binding" in the L-type calcium channel is constructed, and consequences of the model are compared with experimental data. This reduced model treats only ions and the carboxylate oxygens of the EEEE locus explicitly and restricts interactions to hard-core repulsion and ion-ion and ion-dielectric electrostatic forces. The structural atoms provide a flexible environment for passing cations, thus resulting in a self-organized induced-fit model of the selectivity filter. Experimental conditions involving binary mixtures of alkali and/or alkaline earth metal ions are computed using equilibrium Monte Carlo simulations in the grand canonical ensemble. The model pore rejects alkali metal ions in the presence of biological concentrations of Ca(2+) and predicts the blockade of alkali metal ion currents by micromolar Ca(2+). Conductance patterns observed in varied mixtures containing Na(+) and Li(+), or Ba(2+) and Ca(2+), are predicted. Ca(2+) is substantially more potent in blocking Na(+) current than Ba(2+). In apparent contrast to experiments using buffered Ca(2+) solutions, the predicted potency of Ca(2+) in blocking alkali metal ion currents depends on the species and concentration of the alkali metal ion, as is expected if these ions compete with Ca(2+) for the pore. These experiments depend on the problematic estimation of Ca(2+) activity in solutions buffered for Ca(2+) and pH in a varying background of bulk salt. Simulations of Ca(2+) distribution with the model pore bathed in solutions containing a varied amount of Li(+) reveal a "barrier and well" pattern. The entry/exit barrier for Ca(2+) is strongly modulated by the Li(+) concentration of the bath, suggesting a physical explanation for observed kinetic phenomena. Our simulations show that the selectivity of L-type calcium channels can arise from an interplay of electrostatic and hard-core repulsion forces among ions and a few crucial channel atoms. The reduced system selects for the cation that delivers the largest charge in the smallest ion volume.

Indexed as

Ion Channel GatingStatic ElectricityAnimalsBariumBinding, CompetitiveBinding SitesBuffersCalciumCalcium Channels, L-TypeCell MembraneCell Membrane PermeabilityComputer SimulationHumansHydrogen-Ion ConcentrationKineticsLithiumBariumBuffersCalciumCalcium Channels, L-TypeLithiumSodium

Identifiers

PMID19398776
PMCPMC2712969
OpenAlexW2126968092

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.