Evidence map›Paper›PMID 19398770›Full record

ArticleGenetics2009

Snf1 controls the activity of adr1 through dephosphorylation of Ser230.

Sooraj Ratnakumar, Nataly Kacherovsky, Erin Arms, Elton T Young

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
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  4. Genes · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sooraj RatnakumarDepartment of Biochemistry, University of Washington, Seattle, Washington 98195-7350, USA.
Nataly Kacherovsky
Erin Arms
Elton T Young
University of Washington · US

Funding

GENETIC REGULATION OF ALCOHOL METABOLISM IN YEASTR01GM026079 · NIGMS · UNIVERSITY OF WASHINGTON · PI YOUNG, ELTON T. · 1985 to 2013
$6.1M
NIGMS NIH HHS GM26079NIGMS NIH HHS R01 GM026079
6 · The paper itself

Abstract

The transcription factors Adr1 and Cat8 act in concert to regulate the expression of numerous yeast genes after the diauxic shift. Their activities are regulated by Snf1, the yeast homolog of the AMP-activated protein kinase of higher eukaryotes. Cat8 is regulated directly by Snf1, but how Snf1 regulates Adr1 is unknown. Mutations in Adr1 that alleviate glucose repression are clustered between amino acids 227 and 239. This region contains a consensus sequence for protein kinase A, RRAS(230)F, and Ser230 is phosphorylated in vitro by both protein kinase A and Ca(++) calmodulin-dependent protein kinase. Using an antiphosphopeptide antibody, we found that the level of Adr1 phosphorylated on Ser230 was highest in glucose-grown cells and decreased in a Snf1-dependent manner when glucose was depleted. A nonphosphorylatable Ser230Ala mutant was no longer Snf1 dependent for activation of Adr1-dependent genes and could suppress Cat8 dependence at genes coregulated by Adr1 and Cat8. Contrary to expectation, neither protein kinase A (PKA) nor Ca(++) calmodulin-dependent protein kinase appeared to have an important role in Ser230 phosphorylation in vivo, and a screen of 102 viable kinase deletion strains failed to identify a candidate kinase. We conclude that either Ser230 is phosphorylated by multiple protein kinases or its kinase is encoded by an essential gene. Using the Ser230Ala mutant, we explain a long-standing observation of synergy between Adr1 constitutive mutants and Snf1 activation and conclude that dephosphorylation of Ser230 via a Snf1-dependent pathway appears to be a major component of Adr1 regulation.

Indexed as

Blotting, WesternCalcium-Calmodulin-Dependent Protein KinasesCyclic AMP-Dependent Protein KinasesDNA-Binding ProteinsGene Expression Regulation, FungalGenotypeGlucoseMutationPhosphorylationProtein Phosphatase 1Protein Serine-Threonine KinasesReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSerineADR1 protein, S cerevisiaeCalcium-Calmodulin-Dependent Protein KinasesCAT8 protein, S cerevisiaeCyclic AMP-Dependent Protein KinasesDNA-Binding ProteinsGlucoseProtein Phosphatase 1Protein Serine-Threonine KinasesREG1 protein, S cerevisiaeRNA, MessengerSaccharomyces cerevisiae ProteinsSerineSNF1-related protein kinasesTrans-ActivatorsTranscription Factors

Identifiers

PMID19398770
PMCPMC2710155
OpenAlexW1993765043

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.