Evidence map›Paper›PMID 19395570›Full record

ArticleApplied and environmental microbiology2009

Toward cloning of the magnetotactic metagenome: identification of magnetosome island gene clusters in uncultivated magnetotactic bacteria from different aquatic sediments.

Christian Jogler, Wei Lin, Anke Meyerdierks, Michael Kube, Emanuel Katzmann, Christine Flies, Yongxin Pan, Rudolf Amann, Richard Reinhardt, Dirk Schüler

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 127 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Cloneable inorganic nanoparticles.Chemical communications (Cambridge, England) · 2023
    Review
  6. Article
  7. Reply to Monteil et al.: Universal presence of core magnetite biomineralization genes points to ancient symbiosis.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Conservation of magnetite biomineralization genes in all domains of life and implications for magnetic sensing.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Origin of microbial biomineralization and magnetotaxis during the Archean.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  15. Article
  16. Magnetotactic Coccus Strain SHHC-1 Affiliated toFrontiers in microbiology · 2017
    Article
  17. Magnetosome biogenesis in magnetotactic bacteria.Nature reviews. Microbiology · 2016
    Review
  18. Isolation and characterization of Magnetospirillum from saline lagoon.World journal of microbiology & biotechnology · 2016
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Christian JoglerLMU Department Biology I, Planegg-Martinsried, Germany.
Wei Lin
Anke Meyerdierks
Michael Kube
Emanuel Katzmann
Christine Flies
Yongxin Pan
Rudolf Amann
Richard Reinhardt
Dirk Schüler
Max Planck Institute for Marine Microbiology · DEUrologische Klinik München · DEMax Planck Institute for Molecular Genetics · DEChinese Academy of Sciences · CNInstitute of Geology and Geophysics · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this report, we describe the selective cloning of large DNA fragments from magnetotactic metagenomes from various aquatic habitats. This was achieved by a two-step magnetic enrichment which allowed the mass collection of environmental magnetotactic bacteria (MTB) virtually free of nonmagnetic contaminants. Four fosmid libraries were constructed and screened by end sequencing and hybridization analysis using heterologous magnetosome gene probes. A total of 14 fosmids were fully sequenced. We identified and characterized two fosmids, most likely originating from two different alphaproteobacterial strains of MTB that contain several putative operons with homology to the magnetosome island (MAI) of cultivated MTB. This is the first evidence that uncultivated MTB exhibit similar yet differing organizations of the MAI, which may account for the diversity in biomineralization and magnetotaxis observed in MTB from various environments.

Indexed as

Genes, BacterialGenomic IslandsMultigene FamilyWater MicrobiologyCloning, MolecularDNA, BacterialGene OrderMolecular Sequence DataOrganellesPhylogenySequence Analysis, DNASequence HomologyDNA, Bacterial

Identifiers

PMID19395570
PMCPMC2698345
OpenAlexW2163518240

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.