Evidence map›Paper›PMID 19395009›Full record

ArticleCell2009

Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies.

Chengjian Li, Vasily V Vagin, Soohyun Lee, Jia Xu, Shengmei Ma, Hualin Xi, Hervé Seitz, Michael D Horwich, Monika Syrzycka, Barry M Honda and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 342 papers.

0numbers the graph read from it
0cells of the map it votes in
342citing papers in PubMed
64.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

342 citing papers in PubMed, 546 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. piRNA loss unleashes episodic transposition bursts.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. In thebioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Reproductive phasiRNAs are the piRNAs of plants.Trends in genetics : TIG · 2026
    Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. The ongoing invasion of the endogenous retrovirusbioRxiv : the preprint server for biology · 2025
    Article
  19. Article
  20. Review

282 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Chengjian LiDepartment of Biochemistry and Molecular Pharmacology and Howard Hughes Medical Institute, University of Massachusetts Medical School, Worcester, 01605, USA.
Vasily V Vagin
Soohyun Lee
Jia Xu
Shengmei Ma
Hualin Xi
Hervé Seitz
Michael D Horwich
Monika Syrzycka
Barry M Honda
Ellen L W Kittler
Maria L Zapp
Carla Klattenhoff
Nadine Schulz
William E Theurkauf
Zhiping Weng
Phillip D Zamore
University of Massachusetts Chan Medical School · USBoston University · USHoward Hughes Medical Institute · USSimon Fraser University · CA

Funding

RNA localization and translational controlR01HD049116 · NICHD · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI THEURKAUF, WILLIAM EDWARD · 2005 to 2024
$10.8M
Understanding the Mechanism of RNA InterferenceR37GM062862 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZAMORE, PHILLIP D · 2010 to 2019
$5.3M
Understanding microRNA Biogenesis and FunctionR01GM065236 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZAMORE, PHILLIP D · 2003 to 2014
$5.0M
Understanding the Mechanism of RNA Interference (RNAi)R01GM062862 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZAMORE, PHILLIP D · 2001 to 2009
$3.2M
Mitotic Response to DNA damageR01GM050898 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI THEURKAUF, WILLIAM EDWARD · 1995 to 2010
$3.1M
Howard Hughes Medical InstituteNICHD NIH HHS HD049116NICHD NIH HHS R01 HD049116NIGMS NIH HHS GM050898NIGMS NIH HHS GM62862NIGMS NIH HHS GM65236NIGMS NIH HHS R01 GM050898NIGMS NIH HHS R01 GM062862NIGMS NIH HHS R01 GM065236NIGMS NIH HHS R37 GM062862
6 · The paper itself

Abstract

Piwi-interacting RNAs (piRNAs) silence transposons in animal germ cells. piRNAs are thought to derive from long transcripts spanning transposon-rich genomic loci and to direct an autoamplification loop in which an antisense piRNA, bound to Aubergine or Piwi protein, triggers production of a sense piRNA bound to the PIWI protein Argonaute3 (Ago3). In turn, the new piRNA is envisioned to produce a second antisense piRNA. Here, we describe strong loss-of-function mutations in ago3, allowing a direct genetic test of this model. We find that Ago3 acts to amplify piRNA pools and to enforce on them an antisense bias, increasing the number of piRNAs that can act to silence transposons. We also detect a second, Ago3-independent piRNA pathway centered on Piwi. Transposons targeted by this second pathway often reside in the flamenco locus, which is expressed in somatic ovarian follicle cells, suggesting a role for piRNAs beyond the germline.

Indexed as

RetroelementsAnimalsArgonaute ProteinsDrosophila melanogasterDrosophila ProteinsFemaleGene SilencingMutationOvarian FolliclePeptide Initiation FactorsRNA, Small InterferingAGO3 protein, DrosophilaArgonaute ProteinsDrosophila ProteinsPeptide Initiation FactorsRetroelementsRNA, Small Interfering

Identifiers

PMID19395009
PMCPMC2768572
OpenAlexW2101708445

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.