Evidence map›Paper›PMID 19393662›Full record

ArticleJournal of molecular biology2009

Active-site gating regulates substrate selectivity in a chymotrypsin-like serine protease the structure of haemophilus influenzae immunoglobulin A1 protease.

Troy A Johnson, Jiazhou Qiu, Andrew G Plaut, Todd Holyoak

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 73 citations in OpenAlex.

  1. Structure of theProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Article
  3. The structure of the Gemella haemolysans M26 IgA1 protease trypsin-like domain.Acta crystallographica. Section F, Structural biology communications · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Structural and functional significance of the amino acid differences ValInternational journal of biological macromolecules · 2021
    Article
  9. Virulence · 2021
    Article
  10. Immunoglobulin A Glycosylation and Its Role in Disease.Experientia supplementum (2012) · 2021
    Article
  11. Article
  12. Article
  13. IgA: Structure, Function, and Developability.Antibodies (Basel, Switzerland) · 2019
    Review
  14. Small-Molecule Inhibitors ofACS infectious diseases · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Troy A JohnsonDepartment of Biochemistry and Molecular Biology, The University of Kansas Medical Center, Kansas City, KS 66160, USA.
Jiazhou Qiu
Andrew G Plaut
Todd Holyoak
Tufts Medical Center · USUniversity of Kansas Medical Center · US

Funding

XRAY CRYSTALLOGRAPHY CORE (JANUARY 1 - JUNE 30, 2005)P20RR016443 · NCRR · UNIVERSITY OF KANSAS MEDICAL CENTER · PI VINES, CHARLOTTE M · 2001 to 2010
$21.3M
TRAFFICKING OF THE PLASMA MEMBRANE CA2+-ATPASE TO RAFTSP20RR017708 · NCRR · UNIVERSITY OF KANSAS LAWRENCE · PI FISCHER, CHRISTOPHER JAMES · 2002 to 2011
$20.1M
TUFTS CLINICAL AND TRANSLATION SCIENCE INSTITUTE (UL1): BPCAUL1RR025752 · NCRR · TUFTS UNIVERSITY BOSTON · PI SELKER, HARRY P. · 2008 to 2011
$17.6M
IgA Protease Therapy of IgA Nephropathy in Animal ModelsR21DK071675 · NIDDK · TUFTS MEDICAL CENTER · PI PLAUT, ANDREW GEORGE · 2006 to 2007
$451k
NCRR NIH HHS P20 RR016443NCRR NIH HHS P20 RR017708NCRR NIH HHS P20 RR17708NCRR NIH HHS UL1 RR025752NIDDK NIH HHS R21 DK071675
6 · The paper itself

Abstract

We report here the first structure of a member of the immunoglobulin A protease (IgAP) family at 1.75-A resolution. This protease is a founding member of the type V (autotransporter) secretion system and is considered a virulence determinant among the bacteria expressing the enzyme. The structure of the enzyme fits that of a classic autotransporter in which several unique domains necessary for protein function are appended to a central, 100-A-long beta-helical domain. The N-terminal domain of the IgAP is found to possess a chymotrypsin-like fold. However, this catalytic domain contains a unique loop D that extends over the active site acting as a lid, gating substrate access. The data presented provide a structural basis for the known ability of IgAPs to cleave only the proline/serine/threonine-rich hinge peptide unique to IgA1 (isotype 1) in the context of the intact fold of the immunoglobulin. Based upon the structural data, as well as molecular modeling, a model suggesting that the unique extended loop D in this IgAP sterically occludes the active-site binding cleft in the absence of immunoglobulin binding is presented. Only in the context of binding of the IgA1-Fc domain in a valley formed between the N-terminal protease domain and another domain appended to the beta-helix spine (domain 2) is the lid stabilized in an open conformation. The stabilization of this open conformation through Fc association subsequently allows access of the hinge peptide to the active site, resulting in recognition and cleavage of the substrate.

Indexed as

Catalytic DomainChymotrypsinEnzyme StabilityHaemophilus influenzaeImmunoglobulin AImmunoglobulin Fc FragmentsProtein Structure, SecondaryProtein Structure, TertiarySerine EndopeptidasesSubstrate SpecificityChymotrypsinIgA-specific serine endopeptidaseImmunoglobulin AImmunoglobulin Fc FragmentsSerine Endopeptidases

Identifiers

PMID19393662
PMCPMC2720633
OpenAlexW1958001693

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.