ArticleNucleic acids research2009
ANNIE: integrated de novo protein sequence annotation.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed.
- The Acrasis kona genome and developmental transcriptomes reveal deep origins of eukaryotic multicellular pathways.Nature communications · 2024Article
- Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird-of-paradise.Molecular ecology resources · 2021Article
- Genome reconstruction of the non-culturable spinach downy mildew Peronospora effusa by metagenome filtering.PloS one · 2020Article
- Article
- IMA Genome-F 11: Draft genome sequences ofIMA fungus · 2019Article
- Identification and Characterization of a Novel Emaravirus Associated With Jujube (Frontiers in microbiology · 2019Article
- Discovery of a novel splice variant of Fcar (CD89) unravels sequence segments necessary for efficient secretion: A story of bad signal peptides and good ones that nevertheless do not make it.Cell cycle (Georgetown, Tex.) · 2017Article
- Protein Sequence Annotation Tool (PSAT): a centralized web-based meta-server for high-throughput sequence annotations.BMC bioinformatics · 2016Article
- Sequence analysis reveals a conserved extension in the capping enzyme of the alphavirus supergroup, and a homologous domain in nodaviruses.Biology direct · 2015Article
- Article
- On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation.BMC bioinformatics · 2014Article
- What's that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins.Molecular biology of the cell · 2014Review
- Transamidase subunit GAA1/GPAA1 is a M28 family metallo-peptide-synthetase that catalyzes the peptide bond formation between the substrate protein's omega-site and the GPI lipid anchor's phosphoethanolamine.Cell cycle (Georgetown, Tex.) · 2014Article
- Powerful sequence similarity search methods and in-depth manual analyses can identify remote homologs in many apparently "orphan" viral proteins.Journal of virology · 2014Article
- Whole exome sequencing identifies a mutation for a novel form of corneal intraepithelial dyskeratosis.Journal of medical genetics · 2013Article
- Low-resolution structure of the soluble domain GPAA1 (yGPAA170-247) of the glycosylphosphatidylinositol transamidase subunit GPAA1 from Saccharomyces cerevisiae.Bioscience reports · 2013Article
- Viral proteins originated de novo by overprinting can be identified by codon usage: application to the "gene nursery" of Deltaretroviruses.PLoS computational biology · 2013Article
- Evolution of viral proteins originated de novo by overprinting.Molecular biology and evolution · 2012Article
- Tachyon search speeds up retrieval of similar sequences by several orders of magnitude.Bioinformatics (Oxford, England) · 2012Article
- Mutations in ROGDI Cause Kohlschütter-Tönz Syndrome.American journal of human genetics · 2012Article
Corrections and comments
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Function prediction of proteins with computational sequence analysis requires the use of dozens of prediction tools with a bewildering range of input and output formats. Each of these tools focuses on a narrow aspect and researchers are having difficulty obtaining an integrated picture. ANNIE is the result of years of close interaction between computational biologists and computer scientists and automates an essential part of this sequence analytic process. It brings together over 20 function prediction algorithms that have proven sufficiently reliable and indispensable in daily sequence analytic work and are meant to give scientists a quick overview of possible functional assignments of sequence segments in the query proteins. The results are displayed in an integrated manner using an innovative AJAX-based sequence viewer. ANNIE is available online at: http://annie.bii.a-star.edu.sg. This website is free and open to all users and there is no login requirement.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.