Evidence map›Paper›PMID 19387467›Full record

ArticleLeukemia2009

Flow cytometric immunobead assay for the detection of BCR-ABL fusion proteins in leukemia patients.

F Weerkamp, E Dekking, Y Y Ng, V H J van der Velden, H Wai, S Böttcher, M Brüggemann, A J van der Sluijs, A Koning, N Boeckx and 20 more

Abstract readValidation Study
PubMed Publisher
In one paragraph

Article in Leukemia, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Fusion transcripts: Unexploited vulnerabilities in cancer?Wiley interdisciplinary reviews. RNA · 2020
    Review
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  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 10 institutions in 9 countries.

F WeerkampDepartment of Immunology, Erasmus MC, Rotterdam, The Netherlands.
E Dekking
Y Y Ng
V H J van der Velden
H Wai
S Böttcher
M Brüggemann
A J van der Sluijs
A Koning
N Boeckx
N Van Poecke
P Lucio
A Mendonça
L Sedek
T Szczepański
T Kalina
M Kovac
P G Hoogeveen
J Flores-Montero
A Orfao
E Macintyre
L Lhermitte
R Chen
K A J Brouwer-De Cock
A van der Linden
A L Noordijk
W M Comans-Bitter
F J T Staal
J J M van Dongen
EuroFlow Consortium
Erasmus MC · NLBD Biosciences (United States) · USCharles University · CZHôpital Necker-Enfants Malades · FRIPO Porto · PTKU Leuven · BEMedical University of Silesia · PLStichting Kinderoncologie Nederland · NLUniversidad de Salamanca · ESUniversity Hospital Schleswig-Holstein · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BCR-ABL fusion proteins show increased signaling through their ABL tyrosine kinase domain, which can be blocked by specific inhibitors, thereby providing effective treatment. This makes detection of BCR-ABL aberrations of utmost importance for diagnosis, classification and treatment of leukemia patients. BCR-ABL aberrations are currently detected by karyotyping, fluorescence in situ hybridization (FISH) or PCR techniques, which are time consuming and require specialized facilities. We developed a simple flow cytometric immunobead assay for detection of BCR-ABL fusion proteins in cell lysates, using a bead-bound anti-BCR catching antibody and a fluorochrome-conjugated anti-ABL detection antibody. We noticed protein stability problems in lysates caused by proteases from mature myeloid cells. This problem could largely be solved by adding protease inhibitors in several steps of the immunobead assay. Testing of 145 patient samples showed fully concordant results between the BCR-ABL immunobead assay and reverse transcriptase PCR of fusion gene transcripts. Dilution experiments with BCR-ABL positive cell lines revealed sensitivities of at least 1%. We conclude that the BCR-ABL immunobead assay detects all types of BCR-ABL proteins in leukemic cells with high specificity and sensitivity. The assay does not need specialized laboratory facilities other than a flow cytometer, provides results within approximately 4 h, and can be run in parallel to routine immunophenotyping.

Indexed as

Antibodies, MonoclonalFlow CytometryFusion Proteins, bcr-ablHumansImmunoassayLeukemia, Myelogenous, Chronic, BCR-ABL PositivePolymerase Chain ReactionProtease InhibitorsSensitivity and SpecificityAntibodies, MonoclonalFusion Proteins, bcr-ablProtease Inhibitors

Identifiers

PMID19387467
OpenAlexW2017778898

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.